RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 BMP8AQ7Z5Y6 402 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 LRRC17Q8N6Y2 441 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 ANKRD19PQ9H560 264 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 CCDC86Q9H6F5 360 aaKnown RBP9.56□□□□□ -0.88
LIMA1-201ENST00000341247 FOLH1BQ9HBA9 442 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 CPNE5Q9HCH3 593 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 DAPL1A0PJW8 107 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 GABRPO00591 440 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 HPGDSO60760 199 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 HMGN1P05114 100 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 THBS1P07996 1170 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 HTR1FP30939 366 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 FOXK2Q01167 660 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 BNC1Q01954 994 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 SLC3A1Q07837 685 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 TPBGQ13641 420 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 CRMP1Q14194 572 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 ZNHIT3Q15649 155 aaPredicted RBP9.56□□□□□ -0.88
LIMA1-201ENST00000341247 ALG10BQ5I7T1 473 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 IL20RBQ6UXL0 311 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 MRGPREQ86SM8 312 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 OAFQ86UD1 273 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 Q8N9G6 341 aaPredicted RBP9.56□□□□□ -0.88
LIMA1-201ENST00000341247 SLC37A3Q8NCC5 494 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 RCBTB1Q8NDN9 531 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 TSTD1Q8NFU3 115 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 OR4K13Q8NH42 304 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 EFHD2Q96C19 240 aaPredicted RBP9.56□□□□□ -0.88
LIMA1-201ENST00000341247 SLC38A3Q99624 504 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 ALG8Q9BVK2 526 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 FN3KQ9H479 309 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 ZNF223Q9UK11 482 aaPredicted RBP9.56□□□□□ -0.88
LIMA1-201ENST00000341247 E9PI62 339 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 IMPA2O14732 288 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 PTTG1O95997 202 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 IL7P13232 177 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 MYF5P13349 255 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 ALAS2P22557 587 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 APEX1P27695 318 aaKnown RBP9.55□□□□□ -0.88
LIMA1-201ENST00000341247 ACVR1BP36896 505 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 NR4A2P43354 598 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 QSOX2Q6ZRP7 698 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 AKAP14Q86UN6 197 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 NR4A3Q92570 626 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 PTP4A1Q93096 173 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 SEMA6CQ9H3T2 930 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 POMT2Q9UKY4 750 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 PAIP2BQ9ULR5 123 aaKnown RBP9.55□□□□□ -0.88
LIMA1-201ENST00000341247 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.55□□□□□ -0.88
LIMA1-201ENST00000341247 PRR23D1E9PI22 279 aaPredicted RBP9.55□□□□□ -0.88
LIMA1-201ENST00000341247 J3QLW9 94 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 AKAP8O43823 692 aaKnown RBP9.55□□□□□ -0.88
LIMA1-201ENST00000341247 IL1AP01583 271 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 PRR23D2P0DMB1 279 aaPredicted RBP9.55□□□□□ -0.88
LIMA1-201ENST00000341247 ZNF19P17023 458 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 GABRA5P31644 462 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 PRPF38BQ5VTL8 546 aaKnown RBP9.55□□□□□ -0.88
LIMA1-201ENST00000341247 NIPAL3Q6P499 406 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 ZNF322Q6U7Q0 402 aaPredicted RBP9.55□□□□□ -0.88
LIMA1-201ENST00000341247 SDR9C7Q8NEX9 313 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 PRTFDC1Q9NRG1 225 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 WSB2Q9NYS7 404 aaPredicted RBP9.55□□□□□ -0.88
LIMA1-201ENST00000341247 CLEC4AQ9UMR7 237 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 GRIP1Q9Y3R0 1128 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 TMEM184BQ9Y519 407 aaPredicted RBP9.55□□□□□ -0.88
LIMA1-201ENST00000341247 SPENQ96T58 3664 aaKnown RBP9.55□□□□□ -0.88
LIMA1-201ENST00000341247 HEATR5AQ86XA9 2040 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 A0A087WV62 115 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 A0A1W2PPC4 97 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 BHLHE40O14503 412 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 WNT1P04628 370 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 SLC35E2P0CK97 266 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 DDI2Q5TDH0 399 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 RFLNBQ8N5W9 214 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 ACBD7Q8N6N7 88 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 OR4C3Q8NH37 302 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 ZMYND19Q96E35 227 aaPredicted RBP9.55□□□□□ -0.88
LIMA1-201ENST00000341247 SRRQ9GZT4 340 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 SIGLEC7Q9Y286 467 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 UGT2A1Q9Y4X1 527 aa9.55□□□□□ -0.88
LIMA1-201ENST00000341247 IRGMA1A4Y4 181 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 FAM86C2PA6NEL3 165 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 OR5K4A6NMS3 321 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 FAM171A2A8MVW0 826 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 FOXS1O43638 330 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 LYPD3O95274 346 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 NAA10P41227 235 aaPredicted RBP9.54□□□□□ -0.88
LIMA1-201ENST00000341247 OR2B6P58173 313 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 CDC20Q12834 499 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 GAS6Q14393 721 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 UBXN2BQ14CS0 331 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 P2RY14Q15391 338 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 NPSR1Q6W5P4 371 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 MEPCEQ7L2J0 689 aaKnown RBP9.54□□□□□ -0.88
LIMA1-201ENST00000341247 GLCCI1Q86VQ1 547 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 OR4C6Q8NH72 309 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 CTHRC1Q96CG8 243 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 NECTIN4Q96NY8 510 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 DGAT2Q96PD7 388 aa9.54□□□□□ -0.88
LIMA1-201ENST00000341247 ERMAPQ96PL5 475 aaPredicted RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms