RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PAGE3Q5JUK9 113 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 MPP7Q5T2T1 576 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 PPP1R35Q8TAP8 253 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 ELMOD3Q96FG2 381 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 GFOD1Q9NXC2 390 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 A0A1W2PPV4 95 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 DENRO43583 198 aaKnown RBP11.85□□□□□ -0.51
SDC3-201ENST00000336798 RPA2P15927 270 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 PTGER4P35408 488 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 SLC14A1Q13336 389 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 DPPA2Q7Z7J5 298 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 MDGA1Q8NFP4 955 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 LIPHQ8WWY8 451 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 H1FXQ92522 213 aaKnown RBP11.85□□□□□ -0.51
SDC3-201ENST00000336798 TGIF2Q9GZN2 237 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 H7C1C5 153 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 GLSO94925 669 aaPredicted RBP11.85□□□□□ -0.51
SDC3-201ENST00000336798 LCN6P62502 163 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 DPY19L2P1Q6NXN4 242 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 LINC00696Q6ZRV3 163 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 TMPRSS7Q7RTY8 843 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 SIAH1Q8IUQ4 282 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 GRAMD2AQ8IUY3 354 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 MRPL41Q8IXM3 137 aaKnown RBP11.85□□□□□ -0.51
SDC3-201ENST00000336798 MINDY1Q8N5J2 469 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 ACOT4Q8N9L9 421 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 GPR26Q8NDV2 337 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 OR8J2Q8NGG1 315 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 RSPRY1Q96DX4 576 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 INTS14Q96SY0 518 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 PINK1Q9BXM7 581 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 GNB4Q9HAV0 340 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 TIMM8AO60220 97 aaPredicted RBP11.84□□□□□ -0.51
SDC3-201ENST00000336798 HPGDSO60760 199 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 CTSAP10619 480 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 AHRP35869 848 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 CXCL12P48061 93 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 RPL11P62913 178 aaKnown RBP11.84□□□□□ -0.51
SDC3-201ENST00000336798 ISCA2Q86U28 154 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 MS4A15Q8N5U1 240 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 TMEM185AQ8NFB2 350 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 MSI2Q96DH6 328 aaKnown RBP11.84□□□□□ -0.51
SDC3-201ENST00000336798 DAZAP1Q96EP5 407 aaKnown RBP11.84□□□□□ -0.51
SDC3-201ENST00000336798 ZNF578Q96N58 590 aaPredicted RBP11.84□□□□□ -0.51
SDC3-201ENST00000336798 SLC12A9Q9BXP2 914 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 ANKRD10Q9NXR5 420 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 PRSS21Q9Y6M0 314 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 IDUAP35475 653 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 BATF2Q8N1L9 274 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 IL26Q9NPH9 171 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 INIPQ9NRY2 104 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 OR6C2Q9NZP2 312 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 PRSS38A1L453 326 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 ANTXRLA6NF34 631 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 A6NIZ1 184 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 UNCXA6NJT0 531 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 TRAPPC2LH3BP13 241 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 J3KTA2 159 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 NME4O00746 187 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 RAP1BP61224 184 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 RAP1AP62834 184 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 POU3F1Q03052 451 aaPredicted RBP11.84□□□□□ -0.51
SDC3-201ENST00000336798 OR7G3Q8NG95 312 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 ST7LQ8TDW4 575 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 CTRCQ99895 268 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 WWTR1Q9GZV5 400 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 CALHM2Q9HA72 323 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 TAS2R8Q9NYW2 309 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 SLC23A2Q9UGH3 650 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 ENPP4Q9Y6X5 453 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 ADGRB2O60241 1585 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 E9PI62 339 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 LYRM1O43325 122 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 CLEC3BP05452 202 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 DRD1P21728 446 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 CNN3Q15417 329 aaKnown RBP11.84□□□□□ -0.51
SDC3-201ENST00000336798 ZNF704Q6ZNC4 412 aaPredicted RBP11.84□□□□□ -0.51
SDC3-201ENST00000336798 CDRT4Q8N9R6 151 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 LRRC15Q8TF66 581 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 HAPLN2Q9GZV7 340 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 HIPK2Q9H2X6 1198 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 PAHP00439 452 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 IL2RGP31785 369 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 CD68P34810 354 aaPredicted RBP11.84□□□□□ -0.51
SDC3-201ENST00000336798 SLC9A3R2Q15599 337 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 TRIM61Q5EBN2 209 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 OR7E24Q6IFN5 339 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 OR5H6Q8NGV6 325 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 OR2T35Q8NGX2 323 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 FNDC9Q8TBE3 224 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 GPR148Q8TDV2 347 aa11.84□□□□□ -0.51
SDC3-201ENST00000336798 VRK1Q99986 396 aaPredicted RBP11.84□□□□□ -0.51
SDC3-201ENST00000336798 B4DXG7 233 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 HMGN2P05204 90 aaKnown RBP11.83□□□□□ -0.52
SDC3-201ENST00000336798 ZNF865P0CJ78 1059 aaPredicted RBP11.83□□□□□ -0.52
SDC3-201ENST00000336798 MAOAP21397 527 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 CHATP28329 748 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 EFNA3P52797 238 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 HABP2Q14520 560 aaPredicted RBP11.83□□□□□ -0.52
SDC3-201ENST00000336798 ZNF836Q6ZNA1 936 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms