RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 TRNT1Q96Q11 434 aaKnown RBP14.24□□□□□ -0.13
CLN3-201ENST00000333496 TM9SF2Q99805 663 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 SPOCK3Q9BQ16 436 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 SIKE1Q9BRV8 207 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 SLC25A37Q9NYZ2 338 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 SLAMF8Q9P0V8 285 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 LIPT1Q9Y234 373 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 APCP25054 2843 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 CLDN24A6NM45 220 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 NR5A2O00482 541 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 DVL2O14641 736 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 DNAJA2O60884 412 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 NUDT14O95848 222 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 CSTAP01040 98 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 OPN1LWP04000 364 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 TMIGD3P0DMS9 266 aaPredicted RBP14.23□□□□□ -0.13
CLN3-201ENST00000333496 ETFAP13804 333 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 CTSSP25774 331 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 PGM1P36871 562 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 DLX5P56178 289 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 RAC1P63000 192 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 FOXF1Q12946 379 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 SQLEQ14534 574 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 AGKQ53H12 422 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 MEX3BQ6ZN04 569 aaKnown RBP14.23□□□□□ -0.13
CLN3-201ENST00000333496 LRRC74BQ6ZQY2 392 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 GRAMD2AQ8IUY3 354 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 MCEMP1Q8IX19 187 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 MSRB3Q8IXL7 192 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 GCNT2Q8N0V5 402 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 FAM71CQ8NEG0 241 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 OR5W2Q8NH69 310 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 OIT3Q8WWZ8 545 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 FIG4Q92562 907 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 INTS12Q96CB8 462 aaKnown RBP14.23□□□□□ -0.13
CLN3-201ENST00000333496 ADGRG7Q96K78 797 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 TMEM120AQ9BXJ8 343 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 PINK1Q9BXM7 581 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 TRIM8Q9BZR9 551 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 LAT2Q9GZY6 243 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 CSMD1Q96PZ7 3565 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 NTN1O95631 604 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 IL18BPO95998 194 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 UBTFL6P0CB48 400 aaPredicted RBP14.23□□□□□ -0.13
CLN3-201ENST00000333496 NQO1P15559 274 aaKnown RBP14.23□□□□□ -0.13
CLN3-201ENST00000333496 PRKCAP17252 672 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 NCF2P19878 526 aaPredicted RBP14.23□□□□□ -0.13
CLN3-201ENST00000333496 CRATP43155 626 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 ANXA11P50995 505 aaKnown RBP14.23□□□□□ -0.13
CLN3-201ENST00000333496 EEFSECP57772 596 aaKnown RBP14.23□□□□□ -0.13
CLN3-201ENST00000333496 IRX1P78414 480 aaPredicted RBP14.23□□□□□ -0.13
CLN3-201ENST00000333496 LRIF1Q5T3J3 769 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 CHMP1BQ7LBR1 199 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 TMCO5AQ8N6Q1 288 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 FBXO27Q8NI29 283 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 ZFP3Q96NJ6 502 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 THUMPD3Q9BV44 507 aaKnown RBP14.23□□□□□ -0.13
CLN3-201ENST00000333496 TMEM185BQ9H7F4 350 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 TMEM45AQ9NWC5 275 aa14.23□□□□□ -0.13
CLN3-201ENST00000333496 GPC6Q9Y625 555 aaPredicted RBP14.23□□□□□ -0.13
CLN3-201ENST00000333496 A0A096LPI6 279 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 A0A0J9YW62 118 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 SLC22A20A6NK97 555 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 CLIC1O00299 241 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 ETV2O00321 342 aaPredicted RBP14.22□□□□□ -0.13
CLN3-201ENST00000333496 EIF1AYO14602 144 aaKnown RBP14.22□□□□□ -0.13
CLN3-201ENST00000333496 CYP7B1O75881 506 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 ATP6V1G2O95670 118 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 TFPTP0C1Z6 253 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 NR2F1P10589 423 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 RPS4Y1P22090 263 aaKnown RBP14.22□□□□□ -0.13
CLN3-201ENST00000333496 ADH6P28332 368 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 SHC1P29353 583 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 EIF1P41567 113 aaKnown RBP14.22□□□□□ -0.13
CLN3-201ENST00000333496 MAGEA8P43361 318 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 CCR4P51679 360 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 KCNJ10P78508 379 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 HPCAP84074 193 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 CBFBQ13951 182 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 PON3Q15166 354 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 QPRTQ15274 297 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 SLC25A53Q5H9E4 307 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 EIF3MQ7L2H7 374 aaKnown RBP14.22□□□□□ -0.13
CLN3-201ENST00000333496 DMRTC2Q8IXT2 367 aaPredicted RBP14.22□□□□□ -0.13
CLN3-201ENST00000333496 FITM2Q8N6M3 262 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 TOR1AIP2Q8NFQ8 470 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 FNDC9Q8TBE3 224 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 JKAMPQ9P055 326 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 SLC35A3Q9Y2D2 325 aa14.22□□□□□ -0.13
CLN3-201ENST00000333496 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 AGAP5A6NIR3 686 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 SYT5O00445 386 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 ADAMDEC1O15204 470 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 ADAM11O75078 769 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 TNFSF13O75888 250 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 ELK4P28324 431 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 OPRM1P35372 400 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 ASCL1P50553 236 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 DSTNP60981 165 aa14.21□□□□□ -0.13
CLN3-201ENST00000333496 RPS3AP61247 264 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms