RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 P2RX6O15547 441 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 TPPPO94811 219 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 NDUFB2O95178 105 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 EGFP01133 1207 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 HNRNPA1L2Q32P51 320 aaKnown RBP10.8□□□□□ -0.68
VPS39-201ENST00000318006 INAVAQ3KP66 663 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 GDPD3Q7L5L3 318 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 ST8SIA4Q92187 359 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 PRRC1Q96M27 445 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 CPPED1Q9BRF8 314 aaPredicted RBP10.8□□□□□ -0.68
VPS39-201ENST00000318006 DPH1Q9BZG8 443 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 SLC25A18Q9H1K4 315 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 FZD3Q9NPG1 666 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 HYKKA2RU49 373 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 PIP5K1CO60331 668 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 SRPX2O60687 465 aaPredicted RBP10.8□□□□□ -0.68
VPS39-201ENST00000318006 WDPCPO95876 746 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 C1orf61Q13536 156 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 ELOAQ14241 798 aaKnown RBP10.8□□□□□ -0.68
VPS39-201ENST00000318006 RBMS2Q15434 407 aaKnown RBP10.8□□□□□ -0.68
VPS39-201ENST00000318006 BEX5Q5H9J7 111 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 PHF19Q5T6S3 580 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 IL20RBQ6UXL0 311 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 GAREM2Q75VX8 874 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 DPPA4Q7L190 304 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 CYB561A3Q8NBI2 242 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 SCARB1Q8WTV0 552 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 ZMYND19Q96E35 227 aaPredicted RBP10.8□□□□□ -0.68
VPS39-201ENST00000318006 GIMAP5Q96F15 307 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 SMIM14Q96QK8 99 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 ACPTQ9BZG2 426 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 FBRSQ9HAH7 460 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 ENY2Q9NPA8 101 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 PRODH2Q9UF12 536 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 FBXL2Q9UKC9 423 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.8□□□□□ -0.68
VPS39-201ENST00000318006 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.8□□□□□ -0.68
VPS39-201ENST00000318006 ITGB7P26010 798 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 HOXD9P28356 352 aaPredicted RBP10.8□□□□□ -0.68
VPS39-201ENST00000318006 GIPRP48546 466 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 CAV2P51636 162 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 TAS2R19P59542 299 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 IER5LQ5T953 404 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 C18orf63Q68DL7 685 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 SLC22A25Q6T423 547 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 MRPL43Q8N983 215 aaKnown RBP10.8□□□□□ -0.68
VPS39-201ENST00000318006 OR5T1Q8NG75 326 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 OR51L1Q8NGJ5 315 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 POC1BQ8TC44 478 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 SLC22A8Q8TCC7 542 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 GLYATL2Q8WU03 294 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 ZDHHC12Q96GR4 267 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 METTL2AQ96IZ6 378 aaKnown RBP10.8□□□□□ -0.68
VPS39-201ENST00000318006 NECTIN4Q96NY8 510 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 GPR174Q9BXC1 333 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 TCEAL2Q9H3H9 227 aaPredicted RBP10.8□□□□□ -0.68
VPS39-201ENST00000318006 NIT2Q9NQR4 276 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 LUZP4Q9P127 313 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 NOX1Q9Y5S8 564 aa10.8□□□□□ -0.68
VPS39-201ENST00000318006 LAMB1P07942 1786 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 OR6C6A6NF89 314 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 HHLA1C9JL84 531 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 MUSKO15146 869 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 NCR1O76036 304 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 KNG1P01042 644 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 CSNK2A1P68400 391 aaPredicted RBP10.79□□□□□ -0.68
VPS39-201ENST00000318006 CXADRP78310 365 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 HTR4Q13639 388 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 C3orf38Q5JPI3 329 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 SLX4IPQ5VYV7 408 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 SGPP2Q8IWX5 399 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 ZNF679Q8IYX0 411 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 CSNK2A3Q8NEV1 391 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 ACOT11Q8WXI4 607 aaPredicted RBP10.79□□□□□ -0.68
VPS39-201ENST00000318006 FRZBQ92765 325 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 UHRF1Q96T88 793 aaPredicted RBP10.79□□□□□ -0.68
VPS39-201ENST00000318006 THSD7AQ9UPZ6 1657 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 TSPAN11A1L157 253 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 MED6O75586 246 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 UBL3O95164 117 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 FBXO45P0C2W1 286 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 CEBPBP17676 345 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 GDNFP39905 211 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 AFF3P51826 1226 aaKnown RBP10.79□□□□□ -0.68
VPS39-201ENST00000318006 RPS25P62851 125 aaKnown RBP10.79□□□□□ -0.68
VPS39-201ENST00000318006 ASAH1Q13510 395 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 TDGQ13569 410 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 ALKBH2Q6NS38 261 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 KLHDC8AQ8IYD2 350 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 FNDC9Q8TBE3 224 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 ASB6Q9NWX5 421 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 LHX3Q9UBR4 397 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 PIAS3Q9Y6X2 628 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 ANKRD12Q6UB98 2062 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 MROH6A6NGR9 719 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 GPR39O43194 453 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 GJB3O75712 270 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 KLK3P07288 261 aaPredicted RBP10.79□□□□□ -0.68
VPS39-201ENST00000318006 PIGAP37287 484 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 ETV6P41212 452 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms