RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 RAB40BQ12829 278 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 TSPAN31Q12999 210 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 EXOSC6Q5RKV6 272 aaKnown RBP15.52■□□□□ 0.08
CPSF4-201ENST00000292476 RASSF6Q6ZTQ3 369 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 OR52R1Q8NGF1 315 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 OR52I1Q8NGK6 324 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 SETD6Q8TBK2 473 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 TEX47Q8TBZ9 253 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 TMEM163Q8TC26 289 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 HOXB13Q92826 284 aaPredicted RBP15.52■□□□□ 0.08
CPSF4-201ENST00000292476 CLIP3Q96DZ5 547 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 ART5Q96L15 291 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 ZNF582Q96NG8 517 aaPredicted RBP15.52■□□□□ 0.08
CPSF4-201ENST00000292476 SLC30A2Q9BRI3 323 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 POLR2J2Q9GZM3 115 aaKnown RBP15.52■□□□□ 0.08
CPSF4-201ENST00000292476 SLC38A1Q9H2H9 487 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 ANKRA2Q9H9E1 313 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 C14orf105Q9NVL8 296 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 SIDT1Q9NXL6 827 aaKnown RBP15.52■□□□□ 0.08
CPSF4-201ENST00000292476 TVP23BQ9NYZ1 205 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 SSR3Q9UNL2 185 aa15.52■□□□□ 0.08
CPSF4-201ENST00000292476 RP1P56715 2156 aa15.52■□□□□ 0.07
CPSF4-201ENST00000292476 IQCMA0A1B0GVH7 501 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 TMEM129A0AVI4 362 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 PRODHO43272 600 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 STX11O75558 287 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 IGFBP1P08833 259 aaPredicted RBP15.51■□□□□ 0.07
CPSF4-201ENST00000292476 CT62P0C5K7 136 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 ACP2P11117 423 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 FGF5P12034 268 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 CPEP16870 476 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 MAOAP21397 527 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 EIF2B2P49770 351 aaKnown RBP15.51■□□□□ 0.07
CPSF4-201ENST00000292476 RORCP51449 518 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 E2F1Q01094 437 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 MINDY4Q4G0A6 757 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 CCDC157Q569K6 752 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 PEX5LQ8IYB4 626 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 COX18Q8N8Q8 333 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 CEP19Q96LK0 163 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 SLC38A2Q96QD8 506 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 CDC6Q99741 560 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 LMF2Q9BU23 707 aaKnown RBP15.51■□□□□ 0.07
CPSF4-201ENST00000292476 EVA1AQ9H8M9 152 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 KLHL28Q9NXS3 571 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 CLEC2DQ9UHP7 191 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 EXOSC1Q9Y3B2 195 aaKnown RBP15.51■□□□□ 0.07
CPSF4-201ENST00000292476 WDR45Q9Y484 360 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 COL5A1P20908 1838 aaPredicted RBP15.51■□□□□ 0.07
CPSF4-201ENST00000292476 TLX2O43763 284 aaPredicted RBP15.51■□□□□ 0.07
CPSF4-201ENST00000292476 CYP7B1O75881 506 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 NKX2-2O95096 273 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 CBX7O95931 251 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 ONECUT2O95948 504 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 IL1AP01583 271 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 APOA1P02647 267 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 ADRB1P08588 477 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 MYL12AP19105 171 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 RORAP35398 523 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 SOX18P35713 384 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 MAP3K8P41279 467 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 TAS2R41P59536 307 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 POU6F2P78424 691 aaPredicted RBP15.51■□□□□ 0.07
CPSF4-201ENST00000292476 DCDP81605 110 aaKnown RBP15.51■□□□□ 0.07
CPSF4-201ENST00000292476 FUT7Q11130 342 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 ST3GAL3Q11203 375 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 ZNF155Q12901 538 aaPredicted RBP15.51■□□□□ 0.07
CPSF4-201ENST00000292476 ZNF267Q14586 743 aaPredicted RBP15.51■□□□□ 0.07
CPSF4-201ENST00000292476 DUSP5Q16690 384 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 ZNF311Q5JNZ3 666 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 SLC27A4Q6P1M0 643 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 PHC2Q8IXK0 858 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 GPR151Q8TDV0 419 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 DIO2Q92813 273 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 CDS1Q92903 461 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 LRR1Q96L50 414 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 MED18Q9BUE0 208 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 TEX12Q9BXU0 123 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 MED17Q9NVC6 651 aa15.51■□□□□ 0.07
CPSF4-201ENST00000292476 ASXL3Q9C0F0 2248 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 IGLV3-12A0A075B6K2 115 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 IGKV3D-11A0A0A0MRZ8 115 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 KDM4EB2RXH2 506 aaPredicted RBP15.5■□□□□ 0.07
CPSF4-201ENST00000292476 POLR1CO15160 346 aaPredicted RBP15.5■□□□□ 0.07
CPSF4-201ENST00000292476 CYC1P08574 325 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 FTH1P19P0C7X4 201 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 S1PR1P21453 382 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 SOX3P41225 446 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 WNT4P56705 351 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 FOXC1Q12948 553 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 DOC2BQ14184 412 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 EXOSC7Q15024 291 aaKnown RBP15.5■□□□□ 0.07
CPSF4-201ENST00000292476 LARS2Q15031 903 aaKnown RBP15.5■□□□□ 0.07
CPSF4-201ENST00000292476 ELAVL1Q15717 326 aaKnown RBP15.5■□□□□ 0.07
CPSF4-201ENST00000292476 DECR1Q16698 335 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 C1orf189Q5VU69 101 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 IQCF1Q8N6M8 205 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 CLDN22Q8N7P3 220 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 PLPP5Q8NEB5 264 aa15.5■□□□□ 0.07
CPSF4-201ENST00000292476 FAM83FQ8NEG4 500 aaPredicted RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms