RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 CHMP24386 653 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 CPOXP36551 454 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 ACAA2P42765 397 aaKnown RBP11.53□□□□□ -0.56
SS18-202ENST00000269138 CA7P43166 264 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 LHX2P50458 406 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 EEFSECP57772 596 aaKnown RBP11.53□□□□□ -0.56
SS18-202ENST00000269138 SESN3P58005 492 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 MXRA7P84157 204 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 SRYQ05066 204 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 ZNF585AQ6P3V2 769 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 ERICH5Q6P6B1 374 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 DHRS4L2Q6PKH6 230 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 NCCRP1Q6ZVX7 275 aaPredicted RBP11.53□□□□□ -0.56
SS18-202ENST00000269138 CCDC80Q76M96 950 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 ARMC8Q8IUR7 673 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 SLC30A8Q8IWU4 369 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 PGAM4Q8N0Y7 254 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 GTPBP8Q8N3Z3 284 aaPredicted RBP11.53□□□□□ -0.56
SS18-202ENST00000269138 RNF148Q8N7C7 305 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 RBM15BQ8NDT2 890 aaKnown RBP11.53□□□□□ -0.56
SS18-202ENST00000269138 RELTQ969Z4 430 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 ZBTB8AQ96BR9 441 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 WFDC6Q9BQY6 131 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 PIGQQ9BRB3 760 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 SPATA5L1Q9BVQ7 753 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 EXOSC3Q9NQT5 275 aaKnown RBP11.53□□□□□ -0.56
SS18-202ENST00000269138 CAMK2AQ9UQM7 478 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 AP3M1Q9Y2T2 418 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 ELOVL7A1L3X0 281 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 C7orf72A4D263 438 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 CFAP73A6NFT4 308 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 KDM4EB2RXH2 506 aaPredicted RBP11.52□□□□□ -0.57
SS18-202ENST00000269138 H0YC42 278 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 H3BML4 177 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 LRRTM2O43300 516 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 SEMA7AO75326 666 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 SERPINB7O75635 380 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 NTN1O95631 604 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 PGCP20142 388 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 PRKAR1BP31321 381 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 IDH2P48735 452 aaKnown RBP11.52□□□□□ -0.57
SS18-202ENST00000269138 TPD52P55327 224 aaPredicted RBP11.52□□□□□ -0.57
SS18-202ENST00000269138 CLDN15P56746 228 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 CLDN18P56856 261 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 SRSF1Q07955 248 aaKnown RBP eCLIP11.52□□□□□ -0.57
SS18-202ENST00000269138 EPS8Q12929 822 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 VEZF1Q14119 521 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 DUSP7Q16829 419 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.52□□□□□ -0.57
SS18-202ENST00000269138 WLSQ5T9L3 541 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 INTS11Q5TA45 600 aaKnown RBP11.52□□□□□ -0.57
SS18-202ENST00000269138 AAGABQ6PD74 315 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 PATL1Q86TB9 770 aaKnown RBP11.52□□□□□ -0.57
SS18-202ENST00000269138 FJX1Q86VR8 437 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 GRAMD2AQ8IUY3 354 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 DEFB107AQ8IZN7 70 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 RPRMLQ8N4K4 120 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 GPR32P1Q8NGA4 272 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 SMPDL3BQ92485 455 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 CDRT15Q96T59 188 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 PRR14Q9BWN1 585 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 ALG2Q9H553 416 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 TMEM185BQ9H7F4 350 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 SPAG4Q9NPE6 437 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 ACER3Q9NUN7 267 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 GTF3C1Q12789 2109 aa11.52□□□□□ -0.57
SS18-202ENST00000269138 PRORSD1PA6NEY8 169 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 PEPDP12955 493 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 ZNF17P17021 662 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 POU3F2P20265 443 aaPredicted RBP11.51□□□□□ -0.57
SS18-202ENST00000269138 CD247P20963 164 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 CALB2P22676 271 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 GCKP35557 465 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 SLC6A8P48029 635 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 MNAT1P51948 309 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 SUCLG1P53597 346 aaKnown RBP11.51□□□□□ -0.57
SS18-202ENST00000269138 CLDN20P56880 219 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 CBX1P83916 185 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 SLC25A53Q5H9E4 307 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 RTL6Q6ICC9 239 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 HEATR5AQ86XA9 2040 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 ZNF440Q8IYI8 595 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 ULK2Q8IYT8 1036 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 UBQLNLQ8IYU4 475 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 FAM156AQ8NDB6 213 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 ZNF563Q8TA94 476 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 KCTD14Q9BQ13 255 aaPredicted RBP11.51□□□□□ -0.57
SS18-202ENST00000269138 PINK1Q9BXM7 581 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 PRDM14Q9GZV8 571 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 RELNP78509 3460 aa11.51□□□□□ -0.57
SS18-202ENST00000269138 TMEM229AB2RXF0 380 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 ETV2O00321 342 aaPredicted RBP11.5□□□□□ -0.57
SS18-202ENST00000269138 CCL21O00585 134 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 SEC14L5O43304 696 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 GP1BBP13224 206 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 CPN1P15169 458 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 NCK1P16333 377 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 ZNF708P17019 499 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 SHC1P29353 583 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms