RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 HYLS1Q96M11 299 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 DPH1Q9BZG8 443 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 CLMPQ9H6B4 373 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 SLC9B1P1A6NJY1 282 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 GPR137BO60478 399 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 CPMP14384 443 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 IL32P24001 234 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 CTHP32929 405 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 SORBS1Q9BX66 1292 aaKnown RBP17.94■□□□□ 0.46
UPF1-201ENST00000262803 DYNLRB1Q9NP97 96 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 SLAMF8Q9P0V8 285 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 LRIT1Q9P2V4 623 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 HHLA2Q9UM44 414 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 ERVK-19Q9WJR5 959 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 GJB3O75712 270 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 HIST1H1TP22492 207 aaPredicted RBP17.94■□□□□ 0.46
UPF1-201ENST00000262803 SLC2A5P22732 501 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 GABRB3P28472 473 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 CTSL3PQ5NE16 218 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 B3GNT7Q8NFL0 401 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 OR51L1Q8NGJ5 315 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 OR5W2Q8NH69 310 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 PRELID1Q9Y255 219 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 MMACHCQ9Y4U1 282 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 TRBV11-1A0A0K0K1C0 115 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 MROH6A6NGR9 719 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 SGK494L7N484 410 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 MSX1P28360 303 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 RRAS2P62070 204 aaPredicted RBP17.94■□□□□ 0.46
UPF1-201ENST00000262803 GPR50Q13585 617 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 CLEC14AQ86T13 490 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 OR52R1Q8NGF1 315 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 ZFPM2Q8WW38 1151 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 UBXN10Q96LJ8 280 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 DPCDQ9BVM2 203 aaPredicted RBP17.94■□□□□ 0.46
UPF1-201ENST00000262803 PLEK2Q9NYT0 353 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 NUBP2Q9Y5Y2 271 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 FRS3O43559 492 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 SOX3P41225 446 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 CTSCP53634 463 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 KCTD11Q693B1 232 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 DPY19L2P1Q6NXN4 242 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 ADAMTS14Q8WXS8 1223 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 CNOT9Q92600 299 aaKnown RBP17.93■□□□□ 0.46
UPF1-201ENST00000262803 UPK1BO75841 260 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 CAPNS1P04632 268 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 OR8U9P0C7N5 309 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 SFTPDP35247 375 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 GJA5P36382 358 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 OR7A5Q15622 319 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 ACTBL2Q562R1 376 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 ASB12Q8WXK4 309 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 HINT2Q9BX68 163 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 PLEKHJ1Q9NW61 149 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 B4DXG7 233 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 AKR1C4P17516 323 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 TUBG1P23258 451 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 EFNA3P52797 238 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 CCDC58Q4VC31 144 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 CYB561A3Q8NBI2 242 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 HDAC8Q9BY41 377 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 HIPK2Q9H2X6 1198 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 KIF25Q9UIL4 384 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 EMC9Q9Y3B6 208 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 C1orf105O95561 183 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 HMGN2P05204 90 aaKnown RBP17.93■□□□□ 0.46
UPF1-201ENST00000262803 EMX1Q04741 257 aaPredicted RBP17.93■□□□□ 0.46
UPF1-201ENST00000262803 PDZD9Q8IXQ8 264 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 FAM160A2Q8N612 972 aaPredicted RBP17.93■□□□□ 0.46
UPF1-201ENST00000262803 OR51D1Q8NGF3 324 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 OR5D16Q8NGK9 328 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 MED17Q9NVC6 651 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 TAAR2Q9P1P5 351 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 CSNK1G3Q9Y6M4 447 aa17.93■□□□□ 0.46
UPF1-201ENST00000262803 TRAV18A0A075B6X5 111 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 A8MXE2 369 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 AQP9O43315 295 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 LYRM1O43325 122 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 SEC14L2O76054 403 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 CDK4P11802 303 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 PRKACBP22694 351 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 AOAHP28039 575 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 RPL23AP62750 156 aaKnown RBP17.92■□□□□ 0.46
UPF1-201ENST00000262803 MANEAQ5SRI9 462 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 RETREG3Q86VR2 466 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 LSMEM2Q8N112 164 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 MMP21Q8N119 569 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 B3GNT2Q9NY97 397 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 KCND3Q9UK17 655 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 A0A1B0GTW7 788 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 OR52A4PA6NMU1 304 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 H3BML4 177 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 AKAIN1P0CW23 69 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 ADARB1P78563 741 aaKnown RBP17.92■□□□□ 0.46
UPF1-201ENST00000262803 GARNL3Q5VVW2 1013 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 SLX4IPQ5VYV7 408 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 CBLL1Q75N03 491 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 OR5K2Q8NHB8 316 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 C7orf34Q96L11 122 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 RTP3Q9BQQ7 232 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms