RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 EPB42P16452 691 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 TYRP1P17643 537 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 AGTR1P30556 359 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 CRATP43155 626 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 AP3S2P59780 193 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 GFOD2Q3B7J2 385 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 ZNF831Q5JPB2 1677 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 FAM27D1Q5T7N8 215 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 KIAA1211LQ6NV74 962 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 DEFB132Q7Z7B7 95 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 KLHL5Q96PQ7 755 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 MGME1Q9BQP7 344 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 LAT2Q9GZY6 243 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 MIEF1Q9NQG6 463 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 PARPBPQ9NWS1 579 aa12.13□□□□□ -0.47
MSH2-201ENST00000233146 CCNL1Q9UK58 526 aaPredicted RBP12.13□□□□□ -0.47
MSH2-201ENST00000233146 NPIPB8E9PQR5 432 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 PCDH8O95206 1070 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 FGF1P05230 155 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 ELNP15502 786 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 NME1P15531 152 aaKnown RBP12.12□□□□□ -0.47
MSH2-201ENST00000233146 CDX1P47902 265 aaPredicted RBP12.12□□□□□ -0.47
MSH2-201ENST00000233146 ANXA11P50995 505 aaKnown RBP12.12□□□□□ -0.47
MSH2-201ENST00000233146 RPP30P78346 268 aaKnown RBP12.12□□□□□ -0.47
MSH2-201ENST00000233146 NHLH2Q02577 135 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 ZNF345Q14585 488 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 LINGO4Q6UY18 593 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 ABHD13Q7L211 337 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 PARGQ86W56 976 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 SVIPQ8NHG7 77 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 MALSU1Q96EH3 234 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 UNKLQ9H9P5 680 aaKnown RBP12.12□□□□□ -0.47
MSH2-201ENST00000233146 TMEM138Q9NPI0 162 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 FBXW2Q9UKT8 454 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 CCDC88CQ9P219 2028 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 CLDN9O95484 217 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 ACKR3P25106 362 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 NRG3P56975 720 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 LSM6P62312 80 aaKnown RBP12.12□□□□□ -0.47
MSH2-201ENST00000233146 SLC35D3Q5M8T2 416 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 THEM4Q5T1C6 240 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 MARC1Q5VT66 337 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 SYT12Q8IV01 421 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 ZNF614Q8N883 585 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 B3GALNT2Q8NCR0 500 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 OR5T3Q8NGG3 340 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 CSGALNACT1Q8TDX6 532 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 MRPS31Q92665 395 aaKnown RBP12.12□□□□□ -0.47
MSH2-201ENST00000233146 ZNF471Q9BX82 626 aaPredicted RBP12.12□□□□□ -0.47
MSH2-201ENST00000233146 EBPLQ9BY08 206 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 SFXN1Q9H9B4 322 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 SEC61A2Q9H9S3 476 aa12.12□□□□□ -0.47
MSH2-201ENST00000233146 TMEM184BQ9Y519 407 aaPredicted RBP12.12□□□□□ -0.47
MSH2-201ENST00000233146 SIRT4Q9Y6E7 314 aaPredicted RBP12.12□□□□□ -0.47
MSH2-201ENST00000233146 KDM4EB2RXH2 506 aaPredicted RBP12.11□□□□□ -0.47
MSH2-201ENST00000233146 TSTD3H0UI37 97 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 FARS2O95363 451 aaKnown RBP12.11□□□□□ -0.47
MSH2-201ENST00000233146 APBA3O96018 575 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 UCHL1P09936 223 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 SNRPBP14678 240 aaKnown RBP12.11□□□□□ -0.47
MSH2-201ENST00000233146 RAB5AP20339 215 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 CPT2P23786 658 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 CCND3P30281 292 aaPredicted RBP12.11□□□□□ -0.47
MSH2-201ENST00000233146 CASP9P55211 416 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 SEMG2Q02383 582 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 SURF2Q15527 256 aaPredicted RBP12.11□□□□□ -0.47
MSH2-201ENST00000233146 OR8G1Q15617 311 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 PIANPQ8IYJ0 282 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 IZUMO1Q8IYV9 350 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 HJURPQ8NCD3 748 aaPredicted RBP12.11□□□□□ -0.47
MSH2-201ENST00000233146 DNAAF1Q8NEP3 725 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 OR2G2Q8NGZ5 317 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 RIMS4Q9H426 269 aaPredicted RBP12.11□□□□□ -0.47
MSH2-201ENST00000233146 LHX9Q9NQ69 397 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 MAP4K5Q9Y4K4 846 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 NPFFR2Q9Y5X5 522 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 PHIPQ8WWQ0 1821 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 CKAP5Q14008 2032 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 TMEM272A0A1B0GTI8 110 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 ZNF705EA8MWA4 302 aaPredicted RBP12.11□□□□□ -0.47
MSH2-201ENST00000233146 UPK3BL1B0FP48 263 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 UPK3BL2E5RIL1 263 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 PYCARD-AS1I3L0S3 204 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 OR2F2O95006 317 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 YIF1AO95070 293 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 USP17L7P0C7H9 530 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 BDH1Q02338 343 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 TNFRSF9Q07011 255 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 OR2F1Q13607 317 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 GAMTQ14353 236 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 ZNF322Q6U7Q0 402 aaPredicted RBP12.11□□□□□ -0.47
MSH2-201ENST00000233146 ETV3LQ6ZN32 361 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 TECPR1Q7Z6L1 1165 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 ANGPTL5Q86XS5 388 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 GPC2Q8N158 579 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 OR52I2Q8NH67 350 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 DTD1Q8TEA8 209 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 APOBEC4Q8WW27 367 aaKnown RBP12.11□□□□□ -0.47
MSH2-201ENST00000233146 TEX101Q9BY14 249 aa12.11□□□□□ -0.47
MSH2-201ENST00000233146 OPN3Q9H1Y3 402 aaPredicted RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms