RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 EXOSC3Q9NQT5 275 aaKnown RBP13.68□□□□□ -0.22
PTPRA-201ENST00000216877 PCDHGA5Q9Y5G8 931 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 A0A1B0GUH1 482 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 FLRT2O43155 660 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 KCNAB3O43448 404 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 MTX2O75431 263 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 CSN2P05814 226 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 APEHP13798 732 aaKnown RBP13.67□□□□□ -0.22
PTPRA-201ENST00000216877 IDSP22304 550 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 RPS13P62277 151 aaKnown RBP13.67□□□□□ -0.22
PTPRA-201ENST00000216877 ALKBH2Q6NS38 261 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 TRIM62Q9BVG3 475 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 PBX4Q9BYU1 374 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 EXO5Q9H790 373 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 SYNPO2LQ9H987 977 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 TRIM36Q9NQ86 728 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 CXorf65A6NEN9 183 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 GALR3O60755 368 aaPredicted RBP13.67□□□□□ -0.22
PTPRA-201ENST00000216877 GP1BAP07359 652 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 UBBP0CG47 229 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 UBCP0CG48 685 aaKnown RBP13.67□□□□□ -0.22
PTPRA-201ENST00000216877 FOSL2P15408 326 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 ATF1P18846 271 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 SDHAP31040 664 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 ASMTP46597 345 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 PCP4P48539 62 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 SMIM11AP58511 58 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 TAS2R41P59536 307 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 MINDY4Q4G0A6 757 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 SPRYD7Q5W111 196 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 HORMAD2Q8N7B1 307 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 TRMT2BQ96GJ1 504 aaKnown RBP13.67□□□□□ -0.22
PTPRA-201ENST00000216877 GPA33Q99795 319 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 SMG9Q9H0W8 520 aaKnown RBP13.67□□□□□ -0.22
PTPRA-201ENST00000216877 SLC25A18Q9H1K4 315 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 HMX1Q9NP08 348 aaPredicted RBP13.67□□□□□ -0.22
PTPRA-201ENST00000216877 C5AR2Q9P296 337 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 ACP5P13686 325 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 HOXB9P17482 250 aaPredicted RBP13.67□□□□□ -0.22
PTPRA-201ENST00000216877 BTF3P20290 206 aaKnown RBP13.67□□□□□ -0.22
PTPRA-201ENST00000216877 AQP2P41181 271 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 GPR4P46093 362 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 P2RY4P51582 365 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 HCCSP53701 268 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 TAS2R50P59544 299 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 SRSF3P84103 164 aaKnown RBP13.67□□□□□ -0.22
PTPRA-201ENST00000216877 ZNF322Q6U7Q0 402 aaPredicted RBP13.67□□□□□ -0.22
PTPRA-201ENST00000216877 BHLHA9Q7RTU4 235 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 ACBD7Q8N6N7 88 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 KCTD12Q96CX2 325 aaKnown RBP13.67□□□□□ -0.22
PTPRA-201ENST00000216877 RNF215Q9Y6U7 377 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 KNL1Q8NG31 2342 aa13.67□□□□□ -0.22
PTPRA-201ENST00000216877 E9PQ18 207 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 CCSO14618 274 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 ETHE1O95571 254 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 SMIM10L2AP0DMW4 78 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 SMIM10L2BP0DMW5 78 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 RIDAP52758 137 aaKnown RBP13.66□□□□□ -0.22
PTPRA-201ENST00000216877 HTRA3P83110 453 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 OLFML2AQ68BL7 652 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 NUBPLQ8TB37 319 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 SLAMF9Q96A28 289 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 DERL3Q96Q80 235 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 BBS4Q96RK4 519 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 DTX4Q9Y2E6 619 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 BACE2Q9Y5Z0 518 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 ZSWIM8A7E2V4 1837 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 MYLKQ15746 1914 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 HHLA1C9JL84 531 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 SYT5O00445 386 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 PRMT3O60678 531 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 IGHV2-70P01814 119 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 TBXA2RP21731 343 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 ABCD3P28288 659 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 CCND3P30281 292 aaPredicted RBP13.66□□□□□ -0.22
PTPRA-201ENST00000216877 HMGA2P52926 109 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 MANFP55145 182 aaKnown RBP13.66□□□□□ -0.22
PTPRA-201ENST00000216877 RPS24P62847 133 aaKnown RBP13.66□□□□□ -0.22
PTPRA-201ENST00000216877 RPS27AP62979 156 aaKnown RBP13.66□□□□□ -0.22
PTPRA-201ENST00000216877 UBA52P62987 128 aaKnown RBP13.66□□□□□ -0.22
PTPRA-201ENST00000216877 MAT1AQ00266 395 aaKnown RBP13.66□□□□□ -0.22
PTPRA-201ENST00000216877 CNTN1Q12860 1018 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 PON3Q15166 354 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 TMEM69Q5SWH9 247 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 LIN54Q6MZP7 749 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 MSANTD1Q6ZTZ1 278 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 DEFB128Q7Z7B8 93 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 ARIH2OSQ8N7S6 290 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 ZNF383Q8NA42 475 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 ABHD4Q8TB40 342 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 PPP1R16AQ96I34 528 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 MICU1Q9BPX6 476 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 KLHL9Q9P2J3 617 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 ANTXRLA6NF34 631 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 CLN5O75503 358 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 DAOP14920 347 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 MMP15P51511 669 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 HABP2Q14520 560 aaPredicted RBP13.66□□□□□ -0.22
PTPRA-201ENST00000216877 GFOD2Q3B7J2 385 aa13.66□□□□□ -0.22
PTPRA-201ENST00000216877 PLEKHN1Q494U1 663 aaPredicted RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms