RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 FCN2Q15485 313 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TOMM20LQ6UXN7 152 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ACOT7LQ6ZUV0 252 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF676Q8N7Q3 588 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SMG8Q8ND04 991 aaKnown RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GPX8Q8TED1 209 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CNTNAP3BQ96NU0 1288 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 C16orf70Q9BSU1 422 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 G6PC3Q9BUM1 346 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 STRADBQ9C0K7 418 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SIRPDQ9H106 197 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CDT1Q9H211 546 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 RERGLQ9H628 205 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SUSD2Q9UGT4 822 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TP53TG5Q9Y2B4 290 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 MEMO1Q9Y316 297 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ATG4BQ9Y4P1 393 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 MALRD1Q5VYJ5 2156 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TRAV8-7A0A075B6U6 113 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TRIM77I1YAP6 450 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 P2RY10O00398 339 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TEX33O43247 280 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TPST1O60507 370 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 RBPJQ06330 500 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ACTBL2Q562R1 376 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 MOB3CQ70IA8 216 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SLC16A9Q7RTY1 509 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF420Q8TAQ5 688 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 PEX11GQ96HA9 241 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 LINC00615Q96LM1 132 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SLC38A2Q96QD8 506 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 NIPAL2Q9H841 368 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CBLN4Q9NTU7 201 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TMPRSS11EQ9UL52 423 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TSSC4Q9Y5U2 329 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 BACE2Q9Y5Z0 518 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SLC15A5A6NIM6 579 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF726A6NNF4 738 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GJB5O95377 273 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CER1O95813 267 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 LCATP04180 440 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 MELTFP08582 738 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ACSM4P0C7M7 580 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 HSF1Q00613 529 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TEX44Q53QW1 395 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM198Q66K66 360 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GPD1LQ8N335 351 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 OR52L2PQ8NGH6 319 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 OR2D2Q9H210 308 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ZDHHC11Q9H8X9 412 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ISYNA1Q9NPH2 558 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 KCTD3Q9Y597 815 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 RPS10-NUDT3A0A1W2PQS6 291 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 HMX2A2RU54 273 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 FAM74A7A6NL05 159 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 XPNPEP2O43895 674 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ECI2O75521 394 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 C22orf31O95567 290 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 UBBP0CG47 229 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TBXA2RP21731 343 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 OR4D2P58180 307 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ECM1Q16610 540 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 FAM74A3Q4VXF1 159 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 RNASE12Q5GAN4 147 aaKnown RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 LCLAT1Q6UWP7 414 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GPALPP1Q8IXQ4 340 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF615Q8N8J6 731 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 C1orf127Q8N9H9 656 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 OR4K14Q8NGD5 310 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 OR1L4Q8NGR5 311 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF577Q9BSK1 485 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SLC12A9Q9BXP2 914 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SMCO4Q9NRQ5 59 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TUBE1Q9UJT0 475 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ABCC12Q96J65 1359 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TCRBV16S1A1N1A0A5B0 115 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 FIGNL2A6NMB9 653 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 E5RJQ4 531 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TRAF3IP2O43734 574 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ZIC2O95409 532 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 MCAMP43121 646 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 BRCC3P46736 316 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 RPS10P46783 165 aaKnown RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CACNG1Q06432 222 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TPBGQ13641 420 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SLC29A2Q14542 456 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TAF9Q16594 264 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 OLFML2AQ68BL7 652 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF410Q86VK4 478 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 OR2T11Q8NH01 316 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 WFDC12Q8WWY7 111 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CDKN2AIPNLQ96HQ2 116 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CELF6Q96J87 481 aaKnown RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 UBL7Q96S82 380 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ZSCAN10Q96SZ4 725 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ACSS3Q9H6R3 686 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 BABAM1Q9NWV8 329 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 LMTK3Q96Q04 1460 aa3.34□□□□□ -1.87
SCN1A-221ENST00000641996 SONP18583 2426 aaKnown RBP3.34□□□□□ -1.87
SCN1A-221ENST00000641996 SLC22A20A6NK97 555 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms