RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 C1DQ13901 141 aaKnown RBP13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 STK11Q15831 433 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 ACSM5Q6NUN0 579 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 ZER1Q7Z7L7 766 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 NKAIN4Q8IVV8 208 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 C9orf62Q8N4C0 152 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 GOT1L1Q8NHS2 421 aaPredicted RBP13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 TAPBPLQ9BX59 468 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 GSDMCQ9BYG8 508 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 MED28Q9H204 178 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 KCMF1Q9P0J7 381 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 PRRC2CQ9Y520 2896 aaKnown RBP13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 A0A0A6YYC8 382 aaPredicted RBP13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 SERTM1A2A2V5 107 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 I3L1I5 382 aaPredicted RBP13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 F3P13726 295 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 PRG2P13727 222 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 CPMP14384 443 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 MMP11P24347 488 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 RPS25P62851 125 aaKnown RBP13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 PRAMEF17Q5VTA0 474 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 IKBIPQ70UQ0 350 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 KCTD20Q7Z5Y7 419 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 ZBTB44Q8NCP5 570 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 KLHL6Q8WZ60 621 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 HLA-CQ95604 372 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 LRR1Q96L50 414 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 TIMM29Q9BSF4 260 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 CPNE7Q9UBL6 633 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 MSL3P1P0C860 447 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 GALEQ14376 348 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 NFATC4Q14934 902 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 GPR155Q7Z3F1 870 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 TMEM52Q8NDY8 209 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 GATAD2BQ8WXI9 593 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 PIGKQ92643 395 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 SLC25A46Q96AG3 418 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 TMEM80Q96HE8 168 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 ZNF354BQ96LW1 612 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 TSSK6Q9BXA6 273 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 PLA2G12AQ9BZM1 189 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 C8orf33Q9H7E9 229 aaPredicted RBP13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 C12orf10Q9HB07 376 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 FAM60AQ9NP50 221 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 RBFOX1Q9NWB1 397 aaKnown RBP13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 EIF3KQ9UBQ5 218 aaKnown RBP13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 PIP5K1CO60331 668 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 RFPL3O75679 317 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 HRGP04196 525 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 KCNJ5P48544 419 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 ZNF81P51508 661 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 PCBP3P57721 371 aaKnown RBP13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 TDGQ13569 410 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 KLHL12Q53G59 568 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 NKAIN2Q5VXU1 208 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 DNAJA4Q8WW22 397 aaPredicted RBP13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 ELP4Q96EB1 424 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 METTL2AQ96IZ6 378 aaKnown RBP13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 WDR45Q9Y484 360 aa13.47□□□□□ -0.25
SHROOM1-208ENST00000617339 ZC3H12DA2A288 527 aaKnown RBP13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 HYKKA2RU49 373 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 PEX12O00623 359 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 ICAM2P13598 275 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 CTRB1P17538 263 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 PER3P56645 1201 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 RPS7P62081 194 aaKnown RBP13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 CSTF1Q05048 431 aaKnown RBP13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 CTRB2Q6GPI1 263 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 KRT74Q7RTS7 529 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 SLC35A4Q96G79 324 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 PEX11GQ96HA9 241 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 GAL3ST4Q96RP7 486 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 TBC1D17Q9HA65 648 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 TRPV4Q9HBA0 871 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 ING4Q9UNL4 249 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 CSNK1G3Q9Y6M4 447 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 PROM1O43490 865 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 B3GALT2O43825 422 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 PRKYO43930 277 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 SLC2A10O95528 541 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 HOXB6P17509 224 aaKnown RBP13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 TRHRP34981 398 aaPredicted RBP13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 HTR4Q13639 388 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 INSL4Q14641 139 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 SHISA6Q6ZSJ9 500 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 PRICKLE2Q7Z3G6 844 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 NRMQ8IXM6 262 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 LRRC17Q8N6Y2 441 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 HYLS1Q96M11 299 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 NLGN3Q9NZ94 848 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 BDP1A6H8Y1 2624 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 SVILO95425 2214 aa13.46□□□□□ -0.25
SHROOM1-208ENST00000617339 TEX51A0A1B0GUA7 166 aa13.46□□□□□ -0.26
SHROOM1-208ENST00000617339 AKAP8O43823 692 aaKnown RBP13.46□□□□□ -0.26
SHROOM1-208ENST00000617339 NAT2P11245 290 aa13.46□□□□□ -0.26
SHROOM1-208ENST00000617339 GABRA3P34903 492 aa13.46□□□□□ -0.26
SHROOM1-208ENST00000617339 KHKP50053 298 aa13.46□□□□□ -0.26
SHROOM1-208ENST00000617339 BLKP51451 505 aa13.46□□□□□ -0.26
SHROOM1-208ENST00000617339 SLC48A1Q6P1K1 146 aa13.46□□□□□ -0.26
SHROOM1-208ENST00000617339 TEX261Q6UWH6 196 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms