RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 OR9A2Q8NGT5 310 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 MOSPD2Q8NHP6 518 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 ST8SIA2Q92186 375 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 OSTF1Q92882 214 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 RAD51AP1Q96B01 352 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 TRIM36Q9NQ86 728 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 ASB6Q9NWX5 421 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 MGAT4CQ9UBM8 478 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 ZNF69Q9UC07 566 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 ASB4Q9Y574 426 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 EYSQ5T1H1 3165 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 VCANP13611 3396 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 ARID1BQ8NFD5 2236 aaPredicted RBP17.07■□□□□ 0.32
UPF1-210ENST00000600689 SLC9A3R1O14745 358 aaPredicted RBP17.07■□□□□ 0.32
UPF1-210ENST00000600689 ARPC1BO15143 372 aaKnown RBP17.07■□□□□ 0.32
UPF1-210ENST00000600689 OR5F1O95221 314 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 SIX6O95475 246 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 TFP02787 698 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 MESP2Q0VG99 397 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 OPCMLQ14982 345 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 ZNF793Q6ZN11 406 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 OR5J2Q8NH18 312 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 PFN4Q8NHR9 129 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 SUN3Q8TAQ9 357 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 ST8SIA4Q92187 359 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 C19orf43Q9BQ61 176 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 SPATA5L1Q9BVQ7 753 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 C12orf10Q9HB07 376 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 SLC23A2Q9UGH3 650 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 THY1P04216 161 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 NDUFV2P19404 249 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 UBE2MP61081 183 aaKnown RBP17.06■□□□□ 0.32
UPF1-210ENST00000600689 C6orf132Q5T0Z8 1188 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 HES5Q5TA89 166 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 KIAA1211LQ6NV74 962 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 UBE3DQ7Z6J8 389 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 MRPL43Q8N983 215 aaKnown RBP17.06■□□□□ 0.32
UPF1-210ENST00000600689 OR52N1Q8NH53 320 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 ERMAPQ96PL5 475 aaPredicted RBP17.06■□□□□ 0.32
UPF1-210ENST00000600689 ZNF436Q9C0F3 470 aaPredicted RBP17.06■□□□□ 0.32
UPF1-210ENST00000600689 MRPL39Q9NYK5 338 aaKnown RBP17.06■□□□□ 0.32
UPF1-210ENST00000600689 CACNA1CQ13936 2221 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 SMAD9O15198 467 aaKnown RBP17.06■□□□□ 0.32
UPF1-210ENST00000600689 ERI3O43414 337 aaKnown RBP17.06■□□□□ 0.32
UPF1-210ENST00000600689 RAB3BP20337 219 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 TAS2R38P59533 333 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 RIN1Q13671 783 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 HYAL4Q2M3T9 481 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 GDF7Q7Z4P5 450 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 GRASPQ7Z6J2 395 aaPredicted RBP17.06■□□□□ 0.32
UPF1-210ENST00000600689 ESX1Q8N693 406 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 OR51Q1Q8NH59 317 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 GHSRQ92847 366 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 RGMAQ96B86 450 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 SLC41A3Q96GZ6 507 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 LRRC3BQ96PB8 259 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 DERL3Q96Q80 235 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 SLC25A18Q9H1K4 315 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 C20orf85Q9H1P6 137 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 SDHAF2Q9NX18 166 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 PRKAG2Q9UGJ0 569 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 IL36AQ9UHA7 158 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 ATG4BQ9Y4P1 393 aa17.06■□□□□ 0.32
UPF1-210ENST00000600689 CENPVL1A0A0U1RR11 272 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 ANTXRLA6NF34 631 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 CTNNB1P35222 781 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 GDNFP39905 211 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 ZNF620Q6ZNG0 422 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 OR6M1Q8NGM8 313 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 DIO2Q92813 273 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 OR7D2Q96RA2 312 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 IFT27Q9BW83 186 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 OR52D1Q9H346 318 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 ERVMER34-1Q9H9K5 563 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 CA10Q9NS85 328 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 SCN2AQ99250 2005 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 MEIKINA0A087WXM9 373 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 L7N2F9 121 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 GNB5O14775 395 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 HOXD4P09016 255 aaPredicted RBP17.05■□□□□ 0.32
UPF1-210ENST00000600689 CTRB1P17538 263 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 RAD52P43351 418 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 PDX1P52945 283 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 MELKQ14680 651 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 FAM46CQ5VWP2 391 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 CTRB2Q6GPI1 263 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 NHLRC1Q6VVB1 395 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 OR4N5Q8IXE1 308 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 ADAMTS14Q8WXS8 1223 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 WDR34Q96EX3 536 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 CNRIP1Q96F85 164 aaPredicted RBP17.05■□□□□ 0.32
UPF1-210ENST00000600689 MRGPRX3Q96LB0 322 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 C20orf141Q9NUB4 165 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 TRAV27A0A087WT01 109 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 CDHR4A6H8M9 788 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 ANKRD61A6NGH8 418 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 UCHL1P09936 223 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 SAGP10523 405 aaPredicted RBP17.05■□□□□ 0.32
UPF1-210ENST00000600689 ANXA7P20073 488 aaKnown RBP17.05■□□□□ 0.32
UPF1-210ENST00000600689 CFL1P23528 166 aaKnown RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms