RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 NCOA6Q14686 2063 aaPredicted RBP13.73□□□□□ -0.21
LIG1-219ENST00000600055 LRRK2Q5S007 2527 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 AGAP5A6NIR3 686 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 CLCA1A8K7I4 914 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 PRSS44E7EML9 344 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 ZNF17P17021 662 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 RPS4Y1P22090 263 aaKnown RBP13.72□□□□□ -0.21
LIG1-219ENST00000600055 PSMA4P25789 261 aaKnown RBP13.72□□□□□ -0.21
LIG1-219ENST00000600055 HTR1EP28566 365 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 CHRNB4P30926 498 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 SUMO3P55854 103 aaPredicted RBP13.72□□□□□ -0.21
LIG1-219ENST00000600055 KCNJ10P78508 379 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 FADDQ13158 208 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 SELPLGQ14242 412 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 BCL2A1Q16548 175 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 RUNDC3AQ59EK9 446 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 RIPPLY2Q5TAB7 128 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 ADGRE4PQ86SQ3 457 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 DHDDSQ86SQ9 333 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 LACC1Q8IV20 430 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 LIX1LQ8IVB5 337 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 DPP10Q8N608 796 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 C9orf106Q8NAJ2 232 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 NAXEQ8NCW5 288 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 FBXO27Q8NI29 283 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 CA5BP1Q8WTZ4 195 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 TSPEARQ8WU66 669 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 ASB5Q8WWX0 329 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 CNOT9Q92600 299 aaKnown RBP13.72□□□□□ -0.21
LIG1-219ENST00000600055 ELAC2Q9BQ52 826 aaKnown RBP13.72□□□□□ -0.21
LIG1-219ENST00000600055 CPPED1Q9BRF8 314 aaPredicted RBP13.72□□□□□ -0.21
LIG1-219ENST00000600055 FAM107BQ9H098 131 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 TMEM185BQ9H7F4 350 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 MTHFD2LQ9H903 347 aaPredicted RBP13.72□□□□□ -0.21
LIG1-219ENST00000600055 CALHM2Q9HA72 323 aa13.72□□□□□ -0.21
LIG1-219ENST00000600055 C7orf72A4D263 438 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 NKX2-6A6NCS4 301 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 CD8B2A6NJW9 211 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 FAM90A27PA6NNH2 459 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 C19orf84I3L1E1 186 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 LINC01387J3KSC0 135 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 EFNA2O43921 213 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 ADAM11O75078 769 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 BMP2P12643 396 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 CEACAM8P31997 349 aaPredicted RBP13.71□□□□□ -0.21
LIG1-219ENST00000600055 LSP1P33241 339 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 CRISP3P54108 245 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 CBFBQ13951 182 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 NFYCQ13952 458 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 QPRTQ15274 297 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 SF3B4Q15427 424 aaKnown RBP eCLIP13.71□□□□□ -0.21
LIG1-219ENST00000600055 GCNT6Q5T4J0 391 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 GGNQ86UU5 652 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 LSRQ86X29 649 aaPredicted RBP13.71□□□□□ -0.21
LIG1-219ENST00000600055 VRK2Q86Y07 508 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 MEIOBQ8N635 442 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 FAM71CQ8NEG0 241 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 TOR1AIP2Q8NFQ8 470 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 LILRB4Q8NHJ6 448 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 WDR60Q8WVS4 1066 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 ZNF845Q96IR2 970 aaPredicted RBP13.71□□□□□ -0.21
LIG1-219ENST00000600055 CGREF1Q99674 301 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 TREX2Q9BQ50 279 aaPredicted RBP13.71□□□□□ -0.21
LIG1-219ENST00000600055 A4GALTQ9NPC4 353 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 THUMPD1Q9NXG2 353 aaKnown RBP13.71□□□□□ -0.21
LIG1-219ENST00000600055 ARMCX1Q9P291 453 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 CLCF1Q9UBD9 225 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 SLC35A3Q9Y2D2 325 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 GMEB1Q9Y692 573 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 AP4B1Q9Y6B7 739 aa13.71□□□□□ -0.21
LIG1-219ENST00000600055 KIAA1549Q9HCM3 1950 aa13.71□□□□□ -0.22
LIG1-219ENST00000600055 DSPPQ9NZW4 1301 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 UTP20O75691 2785 aaKnown RBP13.7□□□□□ -0.22
LIG1-219ENST00000600055 LOC100653049A0A140TA62 436 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 MBD3L4A6NDZ8 208 aaPredicted RBP13.7□□□□□ -0.22
LIG1-219ENST00000600055 MBD3L3A6NE82 208 aaPredicted RBP13.7□□□□□ -0.22
LIG1-219ENST00000600055 MBD3L5A6NJ08 208 aaPredicted RBP13.7□□□□□ -0.22
LIG1-219ENST00000600055 DNAJA2O60884 412 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 KRT34O76011 436 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 TGM6O95932 706 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 ARAFP10398 606 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 IL7RP16871 459 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 PRKCAP17252 672 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 GPX2P18283 190 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 DRD4P21917 467 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 PPIBP23284 216 aaKnown RBP13.7□□□□□ -0.22
LIG1-219ENST00000600055 SHC1P29353 583 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 RYKP34925 604 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 TIMP3P35625 211 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 MTPNP58546 118 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 GNGT1P63211 74 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 CAPRIN1Q14444 709 aaKnown RBP13.7□□□□□ -0.22
LIG1-219ENST00000600055 SPATA21Q7Z572 469 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 SNX32Q86XE0 403 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 PEX5LQ8IYB4 626 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 OR52P1PQ8NH57 321 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 MBD3L2Q8NHZ7 208 aaPredicted RBP13.7□□□□□ -0.22
LIG1-219ENST00000600055 NFKBIDQ8NI38 313 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 OIT3Q8WWZ8 545 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 ANKRD27Q96NW4 1050 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms