RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 FGF4P08620 206 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 RPL23AP62750 156 aaKnown RBP19.19■□□□□ 0.66
UPF1-207ENST00000599848 J3QRK9 145 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 PCDH17O14917 1159 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 PRSS3P35030 304 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 KCNJ8Q15842 424 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 SMIM15Q7Z3B0 74 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 PLPP6Q8IY26 295 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 MARVELD2Q8N4S9 558 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 ZFAND1Q8TCF1 268 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 TAAR8Q969N4 342 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 ZNF334Q9HCZ1 680 aaPredicted RBP19.19■□□□□ 0.66
UPF1-207ENST00000599848 C14orf119Q9NWQ9 140 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 ANKRD33BA6NCL7 494 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 ZNF891A8MT65 544 aaPredicted RBP19.18■□□□□ 0.66
UPF1-207ENST00000599848 A8MXE2 369 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 HOXC11O43248 304 aaPredicted RBP19.18■□□□□ 0.66
UPF1-207ENST00000599848 MPIG6BO95866 241 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 IL2RAP01589 272 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 FABP1P07148 127 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 PTNP21246 168 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 HTR5AP47898 357 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 CARD18P57730 90 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 TNFRSF17Q02223 184 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 ZNF566Q969W8 418 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 VN1R3Q9BXE9 311 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 MGAT4CQ9UBM8 478 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 FBXL3Q9UKT7 428 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 MDFIC2A0A1B0GVS7 189 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 MROH6A6NGR9 719 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 MEIS3P2A8K0S8 358 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 F5H0A9 414 aaPredicted RBP19.18■□□□□ 0.66
UPF1-207ENST00000599848 UBFD1O14562 309 aaKnown RBP19.18■□□□□ 0.66
UPF1-207ENST00000599848 GRPRP30550 384 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 DEFA5Q01523 94 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 GPR50Q13585 617 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 SHHQ15465 462 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 COL28A1Q2UY09 1125 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 LIPKQ5VXJ0 399 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 CPZQ66K79 652 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 SLC46A3Q7Z3Q1 461 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 NPWQ8N729 165 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 ACOT11Q8WXI4 607 aaPredicted RBP19.18■□□□□ 0.66
UPF1-207ENST00000599848 NEIL2Q969S2 332 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 NICN1Q9BSH3 213 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 KIF25Q9UIL4 384 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 GJD2Q9UKL4 321 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 AHDC1Q5TGY3 1603 aaPredicted RBP19.18■□□□□ 0.66
UPF1-207ENST00000599848 NAP1L6A6NFF2 107 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 ALOX12BO75342 701 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 SEC14L2O76054 403 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 HTR2AP28223 471 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 SLC10A2Q12908 348 aaPredicted RBP19.18■□□□□ 0.66
UPF1-207ENST00000599848 LINC00696Q6ZRV3 163 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 PDLIM5Q96HC4 596 aaKnown RBP19.18■□□□□ 0.66
UPF1-207ENST00000599848 ZNF681Q96N22 645 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 METTL9Q9H1A3 318 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 APOL3O95236 402 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 MMP12P39900 470 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 MOB3CQ70IA8 216 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 OR52B6Q8NGF0 335 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 LCORQ96JN0 433 aaPredicted RBP19.18■□□□□ 0.66
UPF1-207ENST00000599848 C1QTNF2Q9BXJ5 285 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 GIMAP2Q9UG22 337 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 MAB21L2Q9Y586 359 aa19.18■□□□□ 0.66
UPF1-207ENST00000599848 GABRR1P24046 479 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 DLSTP36957 453 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 ZNF140P52738 457 aaPredicted RBP19.17■□□□□ 0.66
UPF1-207ENST00000599848 MEF2DQ14814 521 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 SLC16A9Q7RTY1 509 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 ISCA2Q86U28 154 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 SAMD8Q96LT4 415 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 MGLLQ99685 303 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.17■□□□□ 0.66
UPF1-207ENST00000599848 HMGN2P05204 90 aaKnown RBP19.17■□□□□ 0.66
UPF1-207ENST00000599848 HSD17B1P14061 328 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 MSR1P21757 451 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 MYBPHQ13203 477 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 TMEM176BQ3YBM2 270 aaPredicted RBP19.17■□□□□ 0.66
UPF1-207ENST00000599848 RNF113BQ8IZP6 322 aaKnown RBP19.17■□□□□ 0.66
UPF1-207ENST00000599848 INSM2Q96T92 566 aaPredicted RBP19.17■□□□□ 0.66
UPF1-207ENST00000599848 SULT4A1Q9BR01 284 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 RANBP3Q9H6Z4 567 aaPredicted RBP19.17■□□□□ 0.66
UPF1-207ENST00000599848 CD93Q9NPY3 652 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 IER3IP1Q9Y5U9 82 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 STK17BO94768 372 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 HLA-FP30511 346 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 SNTB2Q13425 540 aaKnown RBP19.17■□□□□ 0.66
UPF1-207ENST00000599848 TBC1D28Q2M2D7 210 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 VTCN1Q7Z7D3 282 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 TMEM150AQ86TG1 271 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 SLC43A2Q8N370 569 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 ZNF454Q8N9F8 522 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 GLIS1Q8NBF1 620 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 ASB4Q9Y574 426 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 FUT4P22083 530 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 AOAHP28039 575 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 CX3CR1P49238 355 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 GDPGP1Q6ZNW5 385 aa19.17■□□□□ 0.66
UPF1-207ENST00000599848 EDEM2Q9BV94 578 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms