RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 LRIG3Q6UXM1 1119 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 B3GLCTQ6Y288 498 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 FCRLAQ7L513 359 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 ZNF572Q7Z3I7 529 aaPredicted RBP7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 MMGT1Q8N4V1 131 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 ZNF525Q8N782 197 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 ZNF614Q8N883 585 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 COX18Q8N8Q8 333 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 B4GALNT2Q8NHY0 566 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 PIWIL2Q8TC59 973 aaKnown RBP7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 FAM110BQ8TC76 370 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 CDS1Q92903 461 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 ZBTB8AQ96BR9 441 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 L3HYPDHQ96EM0 354 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 FMO2Q99518 471 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 C1QTNF6Q9BXI9 259 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 CACNG6Q9BXT2 260 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 QRSL1Q9H0R6 528 aaKnown RBP7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 ESRP2Q9H6T0 727 aaKnown RBP7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 C3orf14Q9HBI5 128 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 SIRT5Q9NXA8 310 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 TAS2R7Q9NYW3 318 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 SH3BP4Q9P0V3 963 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 ZNF180Q9UJW8 692 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 GRID1Q9ULK0 1009 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 B3GALT5Q9Y2C3 310 aa7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.65□□□□□ -1.18
SHKBP1-220ENST00000599716 BIRC6Q9NR09 4857 aa7.65□□□□□ -1.19
SHKBP1-220ENST00000599716 A0A087WUV0 522 aaPredicted RBP7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 C7orf72A4D263 438 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 SCDO00767 359 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 ZNF195O14628 629 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 TLX2O43763 284 aaPredicted RBP7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 URI1O94763 535 aaPredicted RBP7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 HPGDP15428 266 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 ZNF16P17020 682 aaPredicted RBP7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 SDC1P18827 310 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 IGHV1-2P23083 117 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 ZNF83P51522 516 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 NUDT6P53370 316 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 FOXG1P55316 489 aaPredicted RBP7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 CHRNEQ04844 493 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 LASP1Q14847 261 aaKnown RBP7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 TMEM249Q2WGJ8 235 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 CDC73Q6P1J9 531 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 TRABD2AQ86V40 505 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 RELL1Q8IUW5 271 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 CDRT4Q8N9R6 151 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 OR52N5Q8NH56 324 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 HOXB13Q92826 284 aaPredicted RBP7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 PPCDCQ96CD2 204 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 REXO5Q96IC2 774 aaKnown RBP7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 PSD2Q9BQI7 771 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 ALG2Q9H553 416 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 UBQLN4Q9NRR5 601 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 GLRX2Q9NS18 164 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 SIRT3Q9NTG7 399 aaPredicted RBP7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 STOML1Q9UBI4 398 aa7.64□□□□□ -1.19
SHKBP1-220ENST00000599716 CENPVL1A0A0U1RR11 272 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 TMEM233B4DJY2 109 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 E7EQL1 145 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 NPIPB8E9PQR5 432 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 SMAD9O15198 467 aaKnown RBP7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 RAD51DO75771 328 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 CYP7B1O75881 506 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 RSL1D1O76021 490 aaKnown RBP7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 PRKD3O94806 890 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 SLITRK5O94991 958 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 H6PDO95479 791 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 HMGN2P05204 90 aaKnown RBP7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 YES1P07947 543 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 GSTA1P08263 222 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 ALOX5P09917 674 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 FAM153BP0C7A2 387 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 LINC00032P0C843 101 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 MYL2P10916 166 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 PRKCAP17252 672 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 CCR4P51679 360 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 RPS26P62854 115 aaKnown RBP7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 RPL38P63173 70 aaKnown RBP7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 POU6F2P78424 691 aaPredicted RBP7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 ITGADQ13349 1161 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 P2RY6Q15077 328 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 PPA1Q15181 289 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 FAM153CQ494X1 144 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 GALNTL6Q49A17 601 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 VPS26BQ4G0F5 336 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 RFTN2Q52LD8 501 aaPredicted RBP7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 PDSS1Q5T2R2 415 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 C9orf135Q5VTT2 229 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 ZYG11AQ6WRX3 759 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 TIFABQ6ZNK6 161 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 Q6ZSR9 355 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 FRMD7Q6ZUT3 714 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 TRIM46Q7Z4K8 759 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 HMGN2P46Q86SG4 172 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 SLC22A9Q8IVM8 553 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 GSPT2Q8IYD1 628 aaKnown RBP7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 CLEC4FQ8N1N0 589 aa7.63□□□□□ -1.19
SHKBP1-220ENST00000599716 TMCO5AQ8N6Q1 288 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms