RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 ZG16BQ96DA0 208 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 RNF145Q96MT1 663 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 UCN2Q96RP3 112 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 LAT2Q9GZY6 243 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 QRSL1Q9H0R6 528 aaKnown RBP12.5□□□□□ -0.41
UPF1-205ENST00000598209 KCNJ16Q9NPI9 418 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 SLC25A37Q9NYZ2 338 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 CLCF1Q9UBD9 225 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 P2RX2Q9UBL9 471 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 A0A1W2PP18 115 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 CYSRT1A8MQ03 144 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 H0YC42 278 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 CYP7B1O75881 506 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 UBTFL6P0CB48 400 aaPredicted RBP12.49□□□□□ -0.41
UPF1-205ENST00000598209 PSMA4P25789 261 aaKnown RBP12.49□□□□□ -0.41
UPF1-205ENST00000598209 ARFIP2P53365 341 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 TPD52P55327 224 aaPredicted RBP12.49□□□□□ -0.41
UPF1-205ENST00000598209 CLDN15P56746 228 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 CLDN20P56880 219 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 EEFSECP57772 596 aaKnown RBP12.49□□□□□ -0.41
UPF1-205ENST00000598209 FOXF1Q12946 379 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 SKP2Q13309 424 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 RGNQ15493 299 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 MAPK11Q15759 364 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 TOMM34Q15785 309 aaPredicted RBP12.49□□□□□ -0.41
UPF1-205ENST00000598209 EIF3MQ7L2H7 374 aaKnown RBP12.49□□□□□ -0.41
UPF1-205ENST00000598209 GRAMD2AQ8IUY3 354 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 MSRB3Q8IXL7 192 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 TOR1AIP2Q8NFQ8 470 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 OR5W2Q8NH69 310 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 GPR119Q8TDV5 335 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 ARSGQ96EG1 525 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 RAD21L1Q9H4I0 556 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 RUBCNLQ9H714 662 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.49□□□□□ -0.41
UPF1-205ENST00000598209 SLAMF8Q9P0V8 285 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 STOML1Q9UBI4 398 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 SLC35A3Q9Y2D2 325 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 PKDREJQ9NTG1 2253 aa12.49□□□□□ -0.41
UPF1-205ENST00000598209 BCHEP06276 602 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 PGM1P36871 562 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 EIF1P41567 113 aaKnown RBP12.48□□□□□ -0.41
UPF1-205ENST00000598209 ZNF136P52737 540 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 RPS3AP61247 264 aaKnown RBP12.48□□□□□ -0.41
UPF1-205ENST00000598209 RAC1P63000 192 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 KCNJ10P78508 379 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 TFF3Q07654 80 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 FADDQ13158 208 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 CBFBQ13951 182 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 SLC25A35Q3KQZ1 300 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 GGNQ86UU5 652 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 FAM71CQ8NEG0 241 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 FBXO27Q8NI29 283 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 SLC38A5Q8WUX1 472 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 WNT2BQ93097 391 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 TM9SF2Q99805 663 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 THUMPD3Q9BV44 507 aaKnown RBP12.48□□□□□ -0.41
UPF1-205ENST00000598209 PINK1Q9BXM7 581 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 MTHFD2LQ9H903 347 aaPredicted RBP12.48□□□□□ -0.41
UPF1-205ENST00000598209 THUMPD1Q9NXG2 353 aaKnown RBP12.48□□□□□ -0.41
UPF1-205ENST00000598209 CALML5Q9NZT1 146 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 VAPAQ9P0L0 249 aa12.48□□□□□ -0.41
UPF1-205ENST00000598209 LEF1Q9UJU2 399 aaPredicted RBP12.48□□□□□ -0.41
UPF1-205ENST00000598209 GPC6Q9Y625 555 aaPredicted RBP12.48□□□□□ -0.41
UPF1-205ENST00000598209 NBPF19A0A087WUL8 3843 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 TRBV5-3A0A0A0MS03 114 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 TMEM247A6NEH6 219 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 AGAP5A6NIR3 686 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 CLDN24A6NM45 220 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 EIF1AYO14602 144 aaKnown RBP12.47□□□□□ -0.41
UPF1-205ENST00000598209 DVL2O14641 736 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 HNRNPRO43390 633 aaKnown RBP12.47□□□□□ -0.41
UPF1-205ENST00000598209 BCAS1O75363 584 aaPredicted RBP12.47□□□□□ -0.41
UPF1-205ENST00000598209 RCBTB2O95199 551 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 TGM6O95932 706 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 OPN1LWP04000 364 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 SNRPB2P08579 225 aaKnown RBP12.47□□□□□ -0.41
UPF1-205ENST00000598209 NUDT7P0C024 238 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 TFPTP0C1Z6 253 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 TMIGD3P0DMS9 266 aaPredicted RBP12.47□□□□□ -0.41
UPF1-205ENST00000598209 BMP2P12643 396 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 PRKCAP17252 672 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 BMP5P22003 454 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 RPS4Y1P22090 263 aaKnown RBP12.47□□□□□ -0.41
UPF1-205ENST00000598209 PPIBP23284 216 aaKnown RBP12.47□□□□□ -0.41
UPF1-205ENST00000598209 ME2P23368 584 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 CTSSP25774 331 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 ELK4P28324 431 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 ADH6P28332 368 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 CRISP3P54108 245 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 QPRTQ15274 297 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 P4HA3Q7Z4N8 544 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 METTL25Q8N6Q8 603 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 RELL2Q8NC24 303 aaPredicted RBP12.47□□□□□ -0.41
UPF1-205ENST00000598209 TSPEARQ8WU66 669 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 WDR60Q8WVS4 1066 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 PMM1Q92871 262 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 ZNF524Q96C55 264 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 ZNF845Q96IR2 970 aaPredicted RBP12.47□□□□□ -0.41
UPF1-205ENST00000598209 MRGPRX4Q96LA9 322 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms