RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	KLHL15	Q96M94	604 aa		11.31	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	RNF145	Q96MT1	663 aa		11.31	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	POLDIP3	Q9BY77	421 aa	Known RBP	11.31	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	PRRG4	Q9BZD6	226 aa		11.31	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	LAT2	Q9GZY6	243 aa		11.31	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	SERHL2	Q9H4I8	314 aa		11.31	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	FANCF	Q9NPI8	374 aa		11.31	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	SLC35A3	Q9Y2D2	325 aa		11.31	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	EMC9	Q9Y3B6	208 aa		11.31	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	HIVEP1	P15822	2718 aa		11.31	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708		H0YC42	278 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	KIAA0513	O60268	411 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	SLC22A3	O75751	556 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	TGDS	O95455	350 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	NTN1	O95631	604 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	NUDT14	O95848	222 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CGA	P01215	116 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CD1E	P15812	388 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	FKBP2	P26885	142 aa	Known RBP	11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CHI3L1	P36222	383 aa	Predicted RBP	11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CD79B	P40259	229 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	EIF1AX	P47813	144 aa	Known RBP	11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	TPD52	P55327	224 aa	Predicted RBP	11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	UFM1	P61960	85 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	RPS26	P62854	115 aa	Known RBP	11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	IRX1	P78414	480 aa	Predicted RBP	11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CBFB	Q13951	182 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	TESK1	Q15569	626 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CTU2	Q2VPK5	515 aa	Known RBP	11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CBLN3	Q6UW01	205 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	EIF3M	Q7L2H7	374 aa	Known RBP	11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	LUZP2	Q86TE4	346 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	LILRA2	Q8N149	483 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CNEP1R1	Q8N9A8	125 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	OR6K3	Q8NGY3	331 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	POC1B	Q8TC44	478 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	TMEM234	Q8WY98	164 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	ST8SIA1	Q92185	356 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	SMPDL3B	Q92485	455 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	ZNF75CP	Q92670	426 aa	Predicted RBP	11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CPNE4	Q96A23	557 aa	Predicted RBP	11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	C7orf26	Q96N11	449 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	OR52E6	Q96RD3	313 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	PANX1	Q96RD7	426 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	SLC35A5	Q9BS91	424 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CLEC4M	Q9H2X3	399 aa	Predicted RBP	11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	OR51I1	Q9H343	314 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	SDR39U1	Q9NRG7	319 aa	Predicted RBP	11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	PLSCR4	Q9NRQ2	329 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	ZIM2	Q9NZV7	527 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	MARCO	Q9UEW3	520 aa	Predicted RBP	11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CARD8	Q9Y2G2	431 aa		11.3	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	MPDZ	O75970	2070 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	SH3D21	A4FU49	640 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CCDC154	A6NI56	674 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	ZNF195	O14628	629 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CASK	O14936	926 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	GMFG	O60234	142 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	FCMR	O60667	390 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	SS18L1	O75177	396 aa	Predicted RBP	11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	UGT2B17	O75795	530 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	SMNDC1	O75940	238 aa	Known RBP eCLIP	11.29	□□□□□ -0.6	7e-6	■□□□□ 8.6
CDK5RAP3-222	ENST00000581708	CPSF4	O95639	269 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	PLG	P00747	810 aa	Predicted RBP	11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	ZCCHC18	P0CG32	403 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	PRKCA	P17252	672 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	PGC	P20142	388 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	MRPL19	P49406	292 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CTBP2	P56545	445 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CARD18	P57730	90 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	HPCA	P84074	193 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	SELENBP1	Q13228	472 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	SKP2	Q13309	424 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	RNPS1	Q15287	305 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	GPR68	Q15743	365 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	PDZK1	Q5T2W1	519 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	HBM	Q6B0K9	141 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	BTLA	Q7Z6A9	289 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	ANKRD46	Q86W74	232 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	CMIP	Q8IY22	773 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	SLC43A2	Q8N370	569 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	FAM71C	Q8NEG0	241 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	XAGE5	Q8WWM1	108 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	OSTF1	Q92882	214 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	ROPN1L	Q96C74	230 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	REXO5	Q96IC2	774 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	ATP6V1G3	Q96LB4	118 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	TEX37	Q96LM6	180 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	TRNT1	Q96Q11	434 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	GPATCH1	Q9BRR8	931 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	TACO1	Q9BSH4	297 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	WDR55	Q9H6Y2	383 aa	Predicted RBP	11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	EXOSC3	Q9NQT5	275 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	TMEM45A	Q9NWC5	275 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	PROCR	Q9UNN8	238 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	WDR45	Q9Y484	360 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	ABCA4	P78363	2273 aa		11.29	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	TEP1	Q99973	2627 aa	Known RBP	11.28	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708		A0A0J9YW62	118 aa		11.28	□□□□□ -0.6
CDK5RAP3-222	ENST00000581708	SHISA8	B8ZZ34	492 aa		11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms