RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 METTL7AQ9H8H3 244 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 SH2D2AQ9NP31 389 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 KLRF1Q9NZS2 232 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 G3V2T6 193 aa22.92■■□□□ 1.26
SHMT1-207ENST00000580002 EI24O14681 340 aa22.92■■□□□ 1.26
SHMT1-207ENST00000580002 H1F0P07305 194 aaKnown RBP22.92■■□□□ 1.26
SHMT1-207ENST00000580002 DNAJA1P31689 397 aaKnown RBP22.92■■□□□ 1.26
SHMT1-207ENST00000580002 WDR88Q6ZMY6 472 aa22.92■■□□□ 1.26
SHMT1-207ENST00000580002 CYP4Z1Q86W10 505 aa22.92■■□□□ 1.26
SHMT1-207ENST00000580002 FUZQ9BT04 418 aa22.92■■□□□ 1.26
SHMT1-207ENST00000580002 KLHL4Q9C0H6 718 aa22.92■■□□□ 1.26
SHMT1-207ENST00000580002 LAT2Q9GZY6 243 aa22.92■■□□□ 1.26
SHMT1-207ENST00000580002 PDP1Q9P0J1 537 aaPredicted RBP22.92■■□□□ 1.26
SHMT1-207ENST00000580002 CNOT11Q9UKZ1 510 aaKnown RBP22.92■■□□□ 1.26
SHMT1-207ENST00000580002 ADAMDEC1O15204 470 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 DPM1O60762 260 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 CD96P40200 585 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 HMGA2P52926 109 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 FGD3Q5JSP0 725 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 SHQ1Q6PI26 577 aaKnown RBP22.91■■□□□ 1.26
SHMT1-207ENST00000580002 RANBP3LQ86VV4 465 aaPredicted RBP22.91■■□□□ 1.26
SHMT1-207ENST00000580002 CADM2Q8N3J6 435 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 SLC7A13Q8TCU3 470 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 SLC41A3Q96GZ6 507 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 GPR83Q9NYM4 423 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 MED11Q9P086 117 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 SLC7A7Q9UM01 511 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 ICAM5Q9UMF0 924 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 POLHQ9Y253 713 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 H3BNH8 94 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 FPR1P21462 350 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 ELAVL4P26378 380 aaKnown RBP22.91■■□□□ 1.26
SHMT1-207ENST00000580002 MST1P26927 711 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 AQP4P55087 323 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 COLEC12Q5KU26 742 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 SPINK14Q6IE38 97 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 PODNL1Q6PEZ8 512 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 MEX3DQ86XN8 651 aaKnown RBP22.91■■□□□ 1.26
SHMT1-207ENST00000580002 SPACA3Q8IXA5 215 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 OR9Q2Q8NGE9 314 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 ALPK1Q96QP1 1244 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 EPYCQ99645 322 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 NPAS1Q99742 590 aa22.91■■□□□ 1.26
SHMT1-207ENST00000580002 TESQ9UGI8 421 aaKnown RBP22.91■■□□□ 1.26
SHMT1-207ENST00000580002 A0A0G2JMM0 328 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 A0A1B0GWA3 101 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 A0A1W2PPB8 328 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 A0A1W2PRS3 328 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 C7orf72A4D263 438 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 KIR3DP1A8MWS1 328 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 WDPCPO95876 746 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 IDH2P48735 452 aaKnown RBP22.9■■□□□ 1.26
SHMT1-207ENST00000580002 OC90Q02509 493 aaPredicted RBP22.9■■□□□ 1.26
SHMT1-207ENST00000580002 ABHD17BQ5VST6 288 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 ZNF550Q7Z398 422 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 ZDHHC13Q8IUH4 622 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 CYP4Z2PQ8N1L4 340 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 PAQR8Q8TEZ7 354 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 GATA6Q92908 595 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 DCBLD2Q96PD2 775 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 SIGLEC12Q96PQ1 595 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 PRSS27Q9BQR3 290 aa22.9■■□□□ 1.26
SHMT1-207ENST00000580002 CCDC86Q9H6F5 360 aaKnown RBP22.9■■□□□ 1.26
SHMT1-207ENST00000580002 ZNF552Q9H707 407 aaPredicted RBP22.9■■□□□ 1.26
SHMT1-207ENST00000580002 URB1O60287 2271 aaKnown RBP22.9■■□□□ 1.26
SHMT1-207ENST00000580002 TP53I11O14683 189 aa22.89■■□□□ 1.26
SHMT1-207ENST00000580002 LINGO3P0C6S8 592 aa22.89■■□□□ 1.26
SHMT1-207ENST00000580002 ITPKBP27987 946 aa22.89■■□□□ 1.26
SHMT1-207ENST00000580002 HLCSP50747 726 aa22.89■■□□□ 1.26
SHMT1-207ENST00000580002 COL28A1Q2UY09 1125 aa22.89■■□□□ 1.26
SHMT1-207ENST00000580002 PPP4R4Q6NUP7 873 aa22.89■■□□□ 1.26
SHMT1-207ENST00000580002 IZUMO2Q6UXV1 221 aa22.89■■□□□ 1.26
SHMT1-207ENST00000580002 OFCC1Q8IZS5 231 aa22.89■■□□□ 1.26
SHMT1-207ENST00000580002 RNF217Q8TC41 542 aa22.89■■□□□ 1.26
SHMT1-207ENST00000580002 MAGEE2Q8TD90 523 aaPredicted RBP22.89■■□□□ 1.26
SHMT1-207ENST00000580002 OIT3Q8WWZ8 545 aa22.89■■□□□ 1.26
SHMT1-207ENST00000580002 SLC39A7Q92504 469 aa22.89■■□□□ 1.26
SHMT1-207ENST00000580002 ZNF559Q9BR84 538 aa22.89■■□□□ 1.26
SHMT1-207ENST00000580002 DPH1Q9BZG8 443 aa22.89■■□□□ 1.26
SHMT1-207ENST00000580002 SSUH2Q9Y2M2 353 aa22.89■■□□□ 1.26
SHMT1-207ENST00000580002 IGF2RP11717 2491 aa22.89■■□□□ 1.25
SHMT1-207ENST00000580002 DLGAP1O14490 977 aa22.89■■□□□ 1.25
SHMT1-207ENST00000580002 CDC40O60508 579 aaKnown RBP eCLIP22.89■■□□□ 1.25
SHMT1-207ENST00000580002 RRADP55042 308 aa22.89■■□□□ 1.25
SHMT1-207ENST00000580002 TUBA3CQ13748 450 aa22.89■■□□□ 1.25
SHMT1-207ENST00000580002 TUBA3EQ6PEY2 450 aa22.89■■□□□ 1.25
SHMT1-207ENST00000580002 FDCSPQ8NFU4 85 aa22.89■■□□□ 1.25
SHMT1-207ENST00000580002 TMEM255BQ8WV15 326 aa22.89■■□□□ 1.25
SHMT1-207ENST00000580002 C9orf16Q9BUW7 83 aa22.89■■□□□ 1.25
SHMT1-207ENST00000580002 OSBPL11Q9BXB4 747 aa22.89■■□□□ 1.25
SHMT1-207ENST00000580002 HES7Q9BYE0 225 aa22.89■■□□□ 1.25
SHMT1-207ENST00000580002 EXOSC3Q9NQT5 275 aaKnown RBP22.89■■□□□ 1.25
SHMT1-207ENST00000580002 MGAQ8IWI9 3026 aa22.88■■□□□ 1.25
SHMT1-207ENST00000580002 GNB5O14775 395 aa22.88■■□□□ 1.25
SHMT1-207ENST00000580002 MITFO75030 526 aaPredicted RBP22.88■■□□□ 1.25
SHMT1-207ENST00000580002 OR5F1O95221 314 aa22.88■■□□□ 1.25
SHMT1-207ENST00000580002 RASAL1O95294 804 aa22.88■■□□□ 1.25
SHMT1-207ENST00000580002 DAPP51397 102 aa22.88■■□□□ 1.25
SHMT1-207ENST00000580002 SOX8P57073 446 aa22.88■■□□□ 1.25
SHMT1-207ENST00000580002 MICAQ29983 383 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms