RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 LNX2Q8N448 690 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 ARHGEF39Q8N4T4 335 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 CELF2-AS1Q8N7Q2 184 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 OR52L1Q8NGH7 329 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 SPRYD4Q8WW59 207 aaPredicted RBP9.34□□□□□ -0.91
VPS53-220ENST00000576149 AP3S1Q92572 193 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 NECTIN4Q96NY8 510 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 CCDC3Q9BQI4 270 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 FBXL21Q9UKT6 434 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 MYO9BQ13459 2157 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 RDH16O75452 317 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 HLA-DPB1P04440 258 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 IL7P13232 177 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 ST6GAL1P15907 406 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 CELP19835 753 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 CCR5P51681 352 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 CTAG1AP78358 180 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 HHEXQ03014 270 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 FZD2Q14332 565 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 SMUG1Q53HV7 270 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 KIAA0895LQ68EN5 471 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 RPL13AP3Q6NVV1 102 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 ZNF613Q6PF04 617 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 XKRXQ6PP77 449 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 FAM131AQ6UXB0 335 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 SPATC1Q76KD6 591 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 MEPCEQ7L2J0 689 aaKnown RBP9.33□□□□□ -0.92
VPS53-220ENST00000576149 NRARPQ7Z6K4 114 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 CDK20Q8IZL9 346 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 VWA5B2Q8N398 1253 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 OR52R1Q8NGF1 315 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 OR51G2Q8NGK0 314 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 BPIFA2Q96DR5 249 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 CLIP3Q96DZ5 547 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 DCLRE1CQ96SD1 692 aaKnown RBP9.33□□□□□ -0.92
VPS53-220ENST00000576149 ZNF559Q9BR84 538 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 TMED9Q9BVK6 235 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 SEMA6CQ9H3T2 930 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 TIGARQ9NQ88 270 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 GPR27Q9NS67 375 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 C14orf105Q9NVL8 296 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 ASB6Q9NWX5 421 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 TMEM5Q9Y2B1 443 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 FABP12A6NFH5 140 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 SHISA7A6NL88 538 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 CASKO14936 926 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 SOX30O94993 753 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 RCBTB2O95199 551 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 IGLV3-19P01714 112 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 CTSBP07858 339 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 S1PR1P21453 382 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 AZGP1P25311 298 aaKnown RBP9.33□□□□□ -0.92
VPS53-220ENST00000576149 CASP3P42574 277 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 CTBP2P56545 445 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 PSG6Q00889 435 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 AMZ1Q400G9 498 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 GARNL3Q5VVW2 1013 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 VASNQ6EMK4 673 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 B3GLCTQ6Y288 498 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 ACBD7Q8N6N7 88 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 SMRP1Q8NCR6 262 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 OR9A4Q8NGU2 314 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 SUN5Q8TC36 379 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 DNAJA4Q8WW22 397 aaPredicted RBP9.33□□□□□ -0.92
VPS53-220ENST00000576149 OTULINQ96BN8 352 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 DIRAS2Q96HU8 199 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 HDHD5Q9BXW7 423 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 EVA1AQ9H8M9 152 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 TBC1D17Q9HA65 648 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 TMEM27Q9HBJ8 222 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 MEPEQ9NQ76 525 aaPredicted RBP9.33□□□□□ -0.92
VPS53-220ENST00000576149 CMC2Q9NRP2 79 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 POMT2Q9UKY4 750 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 SIGLEC7Q9Y286 467 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 MED31Q9Y3C7 131 aa9.33□□□□□ -0.92
VPS53-220ENST00000576149 A0A1W2PQ09 198 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 SMIM30A4D0T7 59 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 C12orf71A8MTZ7 269 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 GABRPO00591 440 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 DYRK3O43781 588 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 OR10H2O60403 315 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 GUSBP08236 651 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 THEGLP0DJG4 465 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 CTSEP14091 401 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 TYRP1P17643 537 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 PAICSP22234 425 aaKnown RBP9.32□□□□□ -0.92
VPS53-220ENST00000576149 BMP8BP34820 402 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 RFX2P48378 723 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 CAV3P56539 151 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 BDH1Q02338 343 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 DEFB110Q30KQ9 67 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 LRIT3Q3SXY7 679 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 SLC35F1Q5T1Q4 408 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 PRPF38BQ5VTL8 546 aaKnown RBP9.32□□□□□ -0.92
VPS53-220ENST00000576149 ARMC6Q6NXE6 501 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 SMARCD3Q6STE5 483 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 THSD4Q6ZMP0 1018 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 BMP8AQ7Z5Y6 402 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 KLBQ86Z14 1044 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 SLC44A3Q8N4M1 653 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms