RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 LMBRD1Q9NUN5 540 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 MED17Q9NVC6 651 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 ASB6Q9NWX5 421 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 MALT1Q9UDY8 824 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 CCDC151A5D8V7 595 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 FAM181BA6NEQ2 426 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 MIF4GDA9UHW6 222 aaKnown RBP13.93□□□□□ -0.18
VPS53-218ENST00000575207 CYTIPO60759 359 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 MFAP3LO75121 409 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 ERAL1O75616 437 aaKnown RBP13.93□□□□□ -0.18
VPS53-218ENST00000575207 ITGA5P08648 1049 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 FOXG1P55316 489 aaPredicted RBP13.93□□□□□ -0.18
VPS53-218ENST00000575207 PRR5P85299 388 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 R3HCC1LQ7Z5L2 792 aaKnown RBP13.93□□□□□ -0.18
VPS53-218ENST00000575207 UBE2J2Q8N2K1 259 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 ACTRT2Q8TDY3 377 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 SLC9A6Q92581 669 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 POP5Q969H6 163 aaKnown RBP13.93□□□□□ -0.18
VPS53-218ENST00000575207 KATNB1Q9BVA0 655 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 KCNF1Q9H3M0 494 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 ZNF442Q9H7R0 627 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 ANKRA2Q9H9E1 313 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 TCF7L1Q9HCS4 588 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 DYNLRB1Q9NP97 96 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 C1RLQ9NZP8 487 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 TSC22D4Q9Y3Q8 395 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 ARHGAP32A7KAX9 2087 aa13.93□□□□□ -0.18
VPS53-218ENST00000575207 IGHV3-15A0A0B4J1V0 119 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 C3orf84H3BNL1 204 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 PDLIM1O00151 329 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 CCNT2O60583 730 aaKnown RBP13.92□□□□□ -0.18
VPS53-218ENST00000575207 TTC4O95801 387 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 CSF1P09603 554 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 MLNP12872 115 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 RFX3P48380 749 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 CUL3Q13618 768 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 KLF17Q5JT82 389 aaPredicted RBP13.92□□□□□ -0.18
VPS53-218ENST00000575207 SLC48A1Q6P1K1 146 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 APOOLQ6UXV4 268 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 GSTA5Q7RTV2 222 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 PEX26Q7Z412 305 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 C1orf162Q8NEQ5 155 aaPredicted RBP13.92□□□□□ -0.18
VPS53-218ENST00000575207 RDH5Q92781 318 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 ERP27Q96DN0 273 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 TBL1XR1Q9BZK7 514 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 ZNF275Q9NSD4 429 aaPredicted RBP13.92□□□□□ -0.18
VPS53-218ENST00000575207 UTS2RQ9UKP6 389 aa13.92□□□□□ -0.18
VPS53-218ENST00000575207 IGHV1-18A0A0C4DH31 117 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 PPIHO43447 177 aaKnown RBP13.91□□□□□ -0.18
VPS53-218ENST00000575207 EFNA2O43921 213 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 CRYAAP02489 173 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 ADRA2AP08913 450 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 TPM1P09493 284 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 CTAGE8P0CG41 777 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 ELK4P28324 431 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 ZNF41P51814 821 aaPredicted RBP13.91□□□□□ -0.18
VPS53-218ENST00000575207 RAC3P60763 192 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 PRPS1P60891 318 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 PSG6Q00889 435 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 CYP27C1Q4G0S4 372 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 GALNT7Q86SF2 657 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 CTAGE4Q8IX94 777 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 NUP37Q8NFH4 326 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 ZNF675Q8TD23 568 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 RAB39BQ96DA2 213 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 KCNS3Q9BQ31 491 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 TPK1Q9H3S4 243 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 RNF114Q9Y508 228 aa13.91□□□□□ -0.18
VPS53-218ENST00000575207 SH3PXD2BA1X283 911 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 GJE1A6NN92 205 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 VSTM5A8MXK1 200 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 CCDC188H7C350 402 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 ULK1O75385 1050 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 HPXP02790 462 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 NPR2P20594 1047 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 MAGEA6P43360 314 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 VPS41P49754 854 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 PROK1P58294 105 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 PHEXP78562 749 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 MRPS11P82912 194 aaKnown RBP13.9□□□□□ -0.18
VPS53-218ENST00000575207 PDCD1Q15116 288 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 ERCC6LQ2NKX8 1250 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 ARMCX4Q5H9R4 360 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 CDKL4Q5MAI5 379 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 SULT1C3Q6IMI6 304 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 GRHL2Q6ISB3 625 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 SPATA21Q7Z572 469 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 TREML1Q86YW5 311 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 CNTN4Q8IWV2 1026 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 AGGF1Q8N302 714 aaeCLIP13.9□□□□□ -0.18
VPS53-218ENST00000575207 TXLNBQ8N3L3 684 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 SLC16A11Q8NCK7 471 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 OR4F15Q8NGB8 312 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 CKAP2Q8WWK9 683 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 APH1AQ96BI3 265 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 MRGPRX4Q96LA9 322 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 HHATLQ9HCP6 504 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 XAB2Q9HCS7 855 aaKnown RBP13.9□□□□□ -0.18
VPS53-218ENST00000575207 ASH2LQ9UBL3 628 aa13.9□□□□□ -0.18
VPS53-218ENST00000575207 PCDHA9Q9Y5H5 950 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms