RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 MITD1Q8WV92 249 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 FAR1Q8WVX9 515 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 SMPDL3AQ92484 453 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 PHYHIPQ92561 330 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 LPAR1Q92633 364 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 HGDQ93099 445 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 MR1Q95460 341 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 FBXO32Q969P5 355 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 BIRC7Q96CA5 298 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 RAB3CQ96E17 227 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ALG14Q96F25 216 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 LRRC46Q96FV0 321 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 TRMT61AQ96FX7 289 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 CMTM7Q96FZ5 175 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 FAHD2AQ96GK7 314 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 SENP5Q96HI0 755 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 SNX22Q96L94 193 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 NOL4LQ96MY1 436 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 SPATA13Q96N96 652 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 HIST1H2AAQ96QV6 131 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 RBP7Q96R05 134 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ZNF300Q96RE9 604 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 SIGLEC11Q96RL6 698 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 GAL3ST4Q96RP7 486 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 MCCC1Q96RQ3 725 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 RBBP8Q99708 897 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CPNE1Q99829 537 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 EBF4Q9BQW3 602 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 HTATIP2Q9BUP3 242 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 SORBS1Q9BX66 1292 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 QTRT1Q9BXR0 403 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 PRRG3Q9BZD7 231 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 GLIS2Q9BZE0 524 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 TM6SF2Q9BZW4 377 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ZNF436Q9C0F3 470 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 NUAK2Q9H093 628 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 PCBD2Q9H0N5 130 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 POLR3FQ9H1D9 316 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 FBXO44Q9H4M3 255 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 FAM96AQ9H5X1 160 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 COQ10BQ9H8M1 238 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 SLC28A3Q9HAS3 691 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CHST11Q9NPF2 352 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 PDGFCQ9NRA1 345 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ACSS1Q9NUB1 689 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 ZCCHC3Q9NUD5 404 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 DECR2Q9NUI1 292 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 FLRT1Q9NZU1 646 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 PDP1Q9P0J1 537 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 OPTCQ9UBM4 332 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 MGAT4CQ9UBM8 478 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 TRPC4Q9UBN4 977 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 DUX4Q9UBX2 424 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 FBXL2Q9UKC9 423 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 UTS2RQ9UKP6 389 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 DNPEPQ9ULA0 475 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 MOKQ9UQ07 419 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 POFUT2Q9Y2G5 429 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 TNFRSF18Q9Y5U5 241 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 SPACA6W5XKT8 324 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ZSWIM8A7E2V4 1837 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 A2ML1A8K2U0 1454 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 CICQ96RK0 1608 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 TSPOAP1O95153 1857 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 NRKQ7Z2Y5 1582 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 A0A075B6Q4 140 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 ATP6AP2A0A1C7CYW4 349 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 A0A1W2PP18 115 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CXorf65A6NEN9 183 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 GLTPD2A6NH11 291 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 SDR42E2A6NKP2 422 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 SERPINE3A8MV23 424 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CDRT15L2A8MXV6 281 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 C1orf196B1AJZ1 125 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 B4DXG7 233 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 ADAM10O14672 748 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 TP53I11O14683 189 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 PDCD5O14737 125 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 PSMA7O14818 248 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 ADAMTS3O15072 1205 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CFLARO15519 480 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 MTX2O75431 263 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 AP2A1O95782 977 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 AK1P00568 194 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 LDLRP01130 860 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 IGF2P01344 180 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 IFNA17P01571 189 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 APOC3P02656 99 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 MT-ND5P03915 603 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CRYBA1P05813 215 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 GPIP06744 558 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 NBEAP1P0C6P0 100 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 OR8U8P0C7N1 319 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 GIMD1P0DJR0 217 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 NCF1P14598 390 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 TSHRP16473 764 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 NPR2P20594 1047 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 S1PR1P21453 382 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 BGNP21810 368 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms