RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 FAM234BA2RU67 622 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 SLC22A20A6NK97 555 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 POLR3GO15318 223 aaPredicted RBP13.52□□□□□ -0.25
VPS39-210ENST00000568357 GUSBP08236 651 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 HOXB4P17483 251 aaPredicted RBP13.52□□□□□ -0.25
VPS39-210ENST00000568357 UQCRC1P31930 480 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 MRPL19P49406 292 aaKnown RBP13.52□□□□□ -0.25
VPS39-210ENST00000568357 KHKP50053 298 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 P2RX1P51575 399 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 MVDP53602 400 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 KRTAP10-9P60411 292 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 CHRNEQ04844 493 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 SYPL1Q16563 259 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 FBXL19-AS1Q494R0 122 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 TIGD2Q4W5G0 525 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 FRRS1Q6ZNA5 592 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 HMGN2P46Q86SG4 172 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 FUNDC1Q8IVP5 155 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 METTL25Q8N6Q8 603 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 ANKFN1Q8N957 763 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 RFWD2Q8NHY2 731 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 ZFP90Q8TF47 636 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 ARSGQ96EG1 525 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 C14orf79Q96F83 325 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 WDR45Q9Y484 360 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 DCHS2Q6V1P9 2916 aa13.52□□□□□ -0.25
VPS39-210ENST00000568357 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 EIF1AYO14602 144 aaKnown RBP13.51□□□□□ -0.25
VPS39-210ENST00000568357 ADAMDEC1O15204 470 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 ZNF264O43296 627 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 KIAA0513O60268 411 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 EIF4E2O60573 245 aaKnown RBP13.51□□□□□ -0.25
VPS39-210ENST00000568357 BCAS1O75363 584 aaPredicted RBP13.51□□□□□ -0.25
VPS39-210ENST00000568357 TNFSF13O75888 250 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 H6PDO95479 791 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 NUDT14O95848 222 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 UBL4AP11441 157 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 CD1EP15812 388 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 ASCL1P50553 236 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 RAC1P63000 192 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 FOXF1Q12946 379 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 SKP2Q13309 424 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 PON3Q15166 354 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 MAPK11Q15759 364 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 CTU2Q2VPK5 515 aaKnown RBP13.51□□□□□ -0.25
VPS39-210ENST00000568357 GTDC1Q4AE62 458 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 GPAT3Q53EU6 434 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 DNAJC14Q6Y2X3 702 aaPredicted RBP13.51□□□□□ -0.25
VPS39-210ENST00000568357 SPNS3Q6ZMD2 512 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 P4HA3Q7Z4N8 544 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 OR5W2Q8NH69 310 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 FBXO27Q8NI29 283 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 FNDC9Q8TBE3 224 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 RNASE6Q93091 150 aaKnown RBP13.51□□□□□ -0.25
VPS39-210ENST00000568357 THOC1Q96FV9 657 aaKnown RBP13.51□□□□□ -0.25
VPS39-210ENST00000568357 ITCHQ96J02 903 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 ADGRG7Q96K78 797 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 ZFP3Q96NJ6 502 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 SFXN3Q9BWM7 321 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 LAT2Q9GZY6 243 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 QRSL1Q9H0R6 528 aaKnown RBP13.51□□□□□ -0.25
VPS39-210ENST00000568357 TMEM185BQ9H7F4 350 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 POLE3Q9NRF9 147 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 L3MBTL1Q9Y468 752 aa13.51□□□□□ -0.25
VPS39-210ENST00000568357 NAV3Q8IVL0 2385 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 PKDREJQ9NTG1 2253 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 A0A0J9YW62 118 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 A0A1W2PNV4 684 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 EEF1E1-BLOC1S5C9J1V9 151 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 EEF1E1O43324 174 aaKnown RBP13.5□□□□□ -0.25
VPS39-210ENST00000568357 DNAJA2O60884 412 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 AQP8O94778 261 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 NTN1O95631 604 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 KRT75O95678 551 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 CSTAP01040 98 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 ZCCHC18P0CG32 403 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 PRKCAP17252 672 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 SHC1P29353 583 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 SSTR2P30874 369 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 EIF1P41567 113 aaKnown RBP13.5□□□□□ -0.25
VPS39-210ENST00000568357 EIF1AXP47813 144 aaKnown RBP13.5□□□□□ -0.25
VPS39-210ENST00000568357 SUMO3P55854 103 aaPredicted RBP13.5□□□□□ -0.25
VPS39-210ENST00000568357 RPS3AP61247 264 aaKnown RBP13.5□□□□□ -0.25
VPS39-210ENST00000568357 TLE4Q04727 773 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 FGFBP1Q14512 234 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 SGCBQ16585 318 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 SLC2A7Q6PXP3 512 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 BLOC1S3Q6QNY0 202 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 MSANTD1Q6ZTZ1 278 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 EIF3MQ7L2H7 374 aaKnown RBP13.5□□□□□ -0.25
VPS39-210ENST00000568357 LILRA2Q8N149 483 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 ZNF619Q8N2I2 560 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 OR10D3Q8NH80 312 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 GTF2H4Q92759 462 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 STARD4Q96DR4 205 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 AURKBQ96GD4 344 aaPredicted RBP13.5□□□□□ -0.25
VPS39-210ENST00000568357 TRNT1Q96Q11 434 aaKnown RBP13.5□□□□□ -0.25
VPS39-210ENST00000568357 THUMPD3Q9BV44 507 aaKnown RBP13.5□□□□□ -0.25
VPS39-210ENST00000568357 RMND5AQ9H871 391 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 RNF122Q9H9V4 155 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms