RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 ERVPABLB-1P60509 514 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 RPL8P62917 257 aaKnown RBP3.55□□□□□ -1.84
LINC00560-201ENST00000564593 CXCL6P80162 114 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 CNTN2Q02246 1040 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 ZNF154Q13106 437 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 KCNJ11Q14654 390 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 TGIF1Q15583 401 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 QRICH1Q2TAL8 776 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 TMEM17Q86X19 198 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 ZDHHC21Q8IVQ6 265 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 OR2T34Q8NGX1 318 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 PNPT1Q8TCS8 783 aaKnown RBP3.55□□□□□ -1.84
LINC00560-201ENST00000564593 GTSF1Q8WW33 167 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 MYLPFQ96A32 169 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 VPS39Q96JC1 886 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 GLT8D2Q9H1C3 349 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 MIEF1Q9NQG6 463 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 PNO1Q9NRX1 252 aaKnown RBP3.55□□□□□ -1.84
LINC00560-201ENST00000564593 AATFQ9NY61 560 aaKnown RBP eCLIP3.55□□□□□ -1.84
LINC00560-201ENST00000564593 ABCD2Q9UBJ2 740 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 NSD2O96028 1365 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 MROH1Q8NDA8 1641 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 PLA2R1Q13018 1463 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 MLH3Q9UHC1 1453 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 ESYT2A0FGR8 921 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 OR6C65A6NJZ3 312 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 E9PLD3 99 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 CPLX1O14810 134 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 OR1F1O43749 312 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 EFNA2O43921 213 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 TSC22D2O75157 780 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 TM7SF2O76062 418 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 IGF1P05019 195 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 CLUP10909 449 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 HNRNPA2B1P22626 353 aaKnown RBP3.55□□□□□ -1.84
LINC00560-201ENST00000564593 IGHV1-2P23083 117 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 GDF1P27539 372 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 ADSSP30520 456 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 IL2RGP31785 369 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 BDKRB1P46663 353 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 RND3P61587 244 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 CD47Q08722 323 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 PJVKQ0ZLH3 352 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 ASAH1Q13510 395 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 FAM120AOSQ5T036 256 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 CES3Q6UWW8 571 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 C9orf40Q8IXQ3 194 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 ABCA7Q8IZY2 2146 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 GMCL1P1Q8NEA9 526 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 OR2T33Q8NG76 320 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 IL1F10Q8WWZ1 152 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 TMEM80Q96HE8 168 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 TSSK1BQ9BXA7 367 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 RAB33BQ9H082 229 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 SNX6Q9UNH7 406 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 GSTK1Q9Y2Q3 226 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 L3MBTL1Q9Y468 752 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 FRMPD1Q5SYB0 1578 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 ERCC6L2Q5T890 1561 aa3.55□□□□□ -1.84
LINC00560-201ENST00000564593 MROH2AA6NES4 1674 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 NRXN1Q9ULB1 1477 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 PIK3C2BO00750 1634 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 IGHV3-35A0A0C4DH35 117 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 A0A1W2PQ72 361 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 PPIAL4DF5H284 164 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 XPO1O14980 1071 aaKnown RBP3.54□□□□□ -1.84
LINC00560-201ENST00000564593 B3GAT3O94766 335 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 FASP25445 335 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 MDH2P40926 338 aaKnown RBP3.54□□□□□ -1.84
LINC00560-201ENST00000564593 VLDLRP98155 873 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 PDK4Q16654 411 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 TATDN3Q17R31 274 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 GSG1Q2KHT4 349 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 GLYR1Q49A26 553 aaPredicted RBP3.54□□□□□ -1.84
LINC00560-201ENST00000564593 PAN3Q58A45 887 aaKnown RBP3.54□□□□□ -1.84
LINC00560-201ENST00000564593 SLC22A10Q63ZE4 541 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 OLFML2AQ68BL7 652 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 CGB2Q6NT52 195 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 VITQ6UXI7 678 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 HSCBQ8IWL3 235 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 ZNF540Q8NDQ6 660 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 OR9A4Q8NGU2 314 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 RAET1EQ8TD07 263 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 TRUB1Q8WWH5 349 aaKnown RBP3.54□□□□□ -1.84
LINC00560-201ENST00000564593 OSTF1Q92882 214 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 TMEM117Q9H0C3 514 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 MEAF6Q9HAF1 191 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 OR10H1Q9Y4A9 318 aa3.54□□□□□ -1.84
LINC00560-201ENST00000564593 ARHGEF28Q8N1W1 1705 aaKnown RBP3.54□□□□□ -1.84
LINC00560-201ENST00000564593 ATP10DQ9P241 1426 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 TRAPPC8Q9Y2L5 1435 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 UGGT1Q9NYU2 1555 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 PHOX2AO14813 284 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 TBX19O60806 448 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 NEBLO76041 1014 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 CD55P08174 381 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 PDHBP11177 359 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 PAX7P23759 505 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 CA8P35219 290 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 CHI3L1P36222 383 aaPredicted RBP3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms