RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 TMEM247A6NEH6 219 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 SLC22A20A6NK97 555 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 GJE1A6NN92 205 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 KDM4EB2RXH2 506 aaPredicted RBP12.07□□□□□ -0.48
CLK3-213ENST00000563842 SYT5O00445 386 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 EDF1O60869 148 aaKnown RBP12.07□□□□□ -0.48
CLK3-213ENST00000563842 UGT2B17O75795 530 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 LINGO3P0C6S8 592 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 NR2F1P10589 423 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 FCGR2AP12318 317 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 IGFBP2P18065 325 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 ELK4P28324 431 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 SSTR2P30874 369 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 GNA13Q14344 377 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 SQLEQ14534 574 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 FBXL19-AS1Q494R0 122 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 TYW3Q6IPR3 259 aaKnown RBP12.07□□□□□ -0.48
CLK3-213ENST00000563842 CBLN3Q6UW01 205 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 LRRC74BQ6ZQY2 392 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 ESPNLQ6ZVH7 1005 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 DMRTC2Q8IXT2 367 aaPredicted RBP12.07□□□□□ -0.48
CLK3-213ENST00000563842 METTL25Q8N6Q8 603 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 VPS33AQ96AX1 596 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 ARSGQ96EG1 525 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 MRGPRX4Q96LA9 322 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 RNF145Q96MT1 663 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 PINK1Q9BXM7 581 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 PIGMQ9H3S5 423 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 TPT1P8Q9HAU6 139 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 MED4Q9NPJ6 270 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 NPDC1Q9NQX5 325 aaPredicted RBP12.07□□□□□ -0.48
CLK3-213ENST00000563842 MRGBPQ9NV56 204 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 CALML5Q9NZT1 146 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 CCDC167Q9P0B6 97 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 P2RX2Q9UBL9 471 aa12.07□□□□□ -0.48
CLK3-213ENST00000563842 ITPR3Q14573 2671 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 EIF1AYO14602 144 aaKnown RBP12.06□□□□□ -0.48
CLK3-213ENST00000563842 CYP7B1O75881 506 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 H6PDO95479 791 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 NCF2P19878 526 aaPredicted RBP12.06□□□□□ -0.48
CLK3-213ENST00000563842 PGCP20142 388 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 CRATP43155 626 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 CCR4P51679 360 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 SUCLG1P53597 346 aaKnown RBP12.06□□□□□ -0.48
CLK3-213ENST00000563842 CLDN15P56746 228 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 CLDN20P56880 219 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 FGFBP1Q14512 234 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 BLOC1S3Q6QNY0 202 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 DNAJC14Q6Y2X3 702 aaPredicted RBP12.06□□□□□ -0.48
CLK3-213ENST00000563842 FRRS1Q6ZNA5 592 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 KIF18BQ86Y91 864 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 CMIPQ8IY22 773 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 RELL2Q8NC24 303 aaPredicted RBP12.06□□□□□ -0.48
CLK3-213ENST00000563842 RFWD2Q8NHY2 731 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 PNPT1Q8TCS8 783 aaKnown RBP12.06□□□□□ -0.48
CLK3-213ENST00000563842 GPR119Q8TDV5 335 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 TMEM234Q8WY98 164 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 GTF2H4Q92759 462 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 RNASE6Q93091 150 aaKnown RBP12.06□□□□□ -0.48
CLK3-213ENST00000563842 INTS12Q96CB8 462 aaKnown RBP12.06□□□□□ -0.48
CLK3-213ENST00000563842 SPDL1Q96EA4 605 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 C14orf79Q96F83 325 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 PRRG4Q9BZD6 226 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 MTHFD2LQ9H903 347 aaPredicted RBP12.06□□□□□ -0.48
CLK3-213ENST00000563842 CACYBPQ9HB71 228 aaKnown RBP12.06□□□□□ -0.48
CLK3-213ENST00000563842 TIGARQ9NQ88 270 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 ZNF446Q9NWS9 450 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 MCTS1Q9ULC4 181 aaKnown RBP12.06□□□□□ -0.48
CLK3-213ENST00000563842 L3MBTL1Q9Y468 752 aa12.06□□□□□ -0.48
CLK3-213ENST00000563842 ADGRG4Q8IZF6 3080 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 ANKHD1Q8IWZ3 2542 aaKnown RBP12.05□□□□□ -0.48
CLK3-213ENST00000563842 A0A096LPI6 279 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 SHISA8B8ZZ34 492 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 EEF1E1-BLOC1S5C9J1V9 151 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 EEF1E1O43324 174 aaKnown RBP12.05□□□□□ -0.48
CLK3-213ENST00000563842 ATP8B1O43520 1251 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 SYNGR4O95473 234 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 TGM6O95932 706 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 UBTFL6P0CB48 400 aaPredicted RBP12.05□□□□□ -0.48
CLK3-213ENST00000563842 TROVE2P10155 538 aaKnown RBP eCLIP12.05□□□□□ -0.48
CLK3-213ENST00000563842 PRKCAP17252 672 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 PPIBP23284 216 aaKnown RBP12.05□□□□□ -0.48
CLK3-213ENST00000563842 PSMA4P25789 261 aaKnown RBP12.05□□□□□ -0.48
CLK3-213ENST00000563842 EIF1AXP47813 144 aaKnown RBP12.05□□□□□ -0.48
CLK3-213ENST00000563842 SLC6A8P48029 635 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 CRISP3P54108 245 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 DSTNP60981 165 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 KCNJ10P78508 379 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 CHRNEQ04844 493 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 FUT5Q11128 374 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 FOXF1Q12946 379 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 FADDQ13158 208 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 PON3Q15166 354 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 SYPL1Q16563 259 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 AGKQ53H12 422 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 SLC25A53Q5H9E4 307 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 COX20Q5RI15 118 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 METTL21CQ5VZV1 264 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 GTF2IRD2BQ6EKJ0 949 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms