RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 NHLRC1Q6VVB1 395 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 SFTPA1Q8IWL2 248 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 KRT78Q8N1N4 520 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 CAMKVQ8NCB2 501 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 GPR156Q8NFN8 814 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 PXT1Q8NFP0 134 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 OR8J1Q8NGP2 316 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 OR56B4Q8NH76 319 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 LRIG1Q96JA1 1093 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 TSNAXQ99598 290 aaKnown RBP12.39□□□□□ -0.43
CLK3-206ENST00000562078 BTBD1Q9H0C5 482 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 ABCG4Q9H172 646 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 S1PR5Q9H228 398 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 PRMT8Q9NR22 394 aaPredicted RBP12.39□□□□□ -0.43
CLK3-206ENST00000562078 MTCH2Q9Y6C9 303 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 TRIOBPQ9H2D6 2365 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 KCNE1BA0A087WTH5 132 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 ARHGEF33A8MVX0 844 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 PRR23D1E9PI22 279 aaPredicted RBP12.39□□□□□ -0.43
CLK3-206ENST00000562078 GALR3O60755 368 aaPredicted RBP12.39□□□□□ -0.43
CLK3-206ENST00000562078 PRR23D2P0DMB1 279 aaPredicted RBP12.39□□□□□ -0.43
CLK3-206ENST00000562078 OSMP13725 252 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 FPR3P25089 353 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 S100PP25815 95 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 RBMS1P29558 406 aaKnown RBP12.39□□□□□ -0.43
CLK3-206ENST00000562078 RFX3P48380 749 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 FNTBP49356 437 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 XKP51811 444 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 RGNQ15493 299 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 SLC5A12Q1EHB4 618 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 PRAMEF13Q5VWM6 474 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 C12orf73Q69YU5 71 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 ALKBH2Q6NS38 261 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 OAFQ86UD1 273 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 SERPINA12Q8IW75 414 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 ETFBKMTQ8IXQ9 262 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 OXR1Q8N573 874 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 OR10K1Q8NGX5 313 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 HHIPQ96QV1 700 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 SPSB2Q99619 263 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 WDR77Q9BQA1 342 aaPredicted RBP12.39□□□□□ -0.43
CLK3-206ENST00000562078 FAM83CQ9BQN1 747 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 TEX10Q9NXF1 929 aaPredicted RBP12.39□□□□□ -0.43
CLK3-206ENST00000562078 SLC27A6Q9Y2P4 619 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 PCDHB11Q9Y5F2 797 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 NINQ8N4C6 2090 aa12.39□□□□□ -0.43
CLK3-206ENST00000562078 TMEM200CA6NKL6 621 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 SULT1C2O00338 296 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 SLC16A5O15375 505 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 SPINT1O43278 529 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 PRAMEF4O60810 478 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 SLCO2B1O94956 709 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 PRPS2P11908 318 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 PPP3CBP16298 524 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 CELP19835 753 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 PCGF2P35227 344 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 VEGFCP49767 419 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 SEC61A1P61619 476 aaKnown RBP12.38□□□□□ -0.43
CLK3-206ENST00000562078 MTAPQ13126 283 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 GAB1Q13480 694 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 TRAM2Q15035 370 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 SYT14P1Q58G82 188 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 PRAMEF9Q5VWM5 478 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 SFRP4Q6FHJ7 346 aaPredicted RBP12.38□□□□□ -0.43
CLK3-206ENST00000562078 LRRN1Q6UXK5 716 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 NAXDQ8IW45 347 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 RNF175Q8N4F7 328 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 C11orf65Q8NCR3 313 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 DMBX1Q8NFW5 382 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 GANCQ8TET4 914 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 TMEM159Q96B96 161 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 LRR1Q96L50 414 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 ZFP3Q96NJ6 502 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 PLA2G2FQ9BZM2 168 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 ZSCAN32Q9NX65 697 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 DEC1Q9P2X7 70 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 MBD2Q9UBB5 411 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 DHCR7Q9UBM7 475 aaKnown RBP12.38□□□□□ -0.43
CLK3-206ENST00000562078 PLEKHM1Q9Y4G2 1056 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 SPTBN5Q9NRC6 3674 aaKnown RBP12.38□□□□□ -0.43
CLK3-206ENST00000562078 BRWD1Q9NSI6 2320 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 TMEM82A0PJX8 343 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 LAMP1P11279 417 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 LAMP2P13473 410 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 COX7A2P14406 83 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 RORAP35398 523 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 CRATP43155 626 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 HMGA2P52926 109 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 GAS1P54826 345 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 GGTA1PQ4G0N0 100 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 TMEM255AQ5JRV8 349 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 COX20Q5RI15 118 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 PARM1Q6UWI2 310 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 LHFPL3Q86UP9 236 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 FGF14Q92915 247 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 PKP4Q99569 1192 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 QRSL1Q9H0R6 528 aaKnown RBP12.38□□□□□ -0.43
CLK3-206ENST00000562078 OR10A4Q9H209 315 aa12.38□□□□□ -0.43
CLK3-206ENST00000562078 NPDC1Q9NQX5 325 aaPredicted RBP12.38□□□□□ -0.43
CLK3-206ENST00000562078 THSD1Q9NS62 852 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms