RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 TTYH2Q9BSA4 534 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 SLC38A1Q9H2H9 487 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 MED17Q9NVC6 651 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 ALKBH4Q9NXW9 302 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 SLAMF8Q9P0V8 285 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 LEF1Q9UJU2 399 aaPredicted RBP8.47□□□□□ -1.05
LDLR-211ENST00000560173 ICAM5Q9UMF0 924 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 CAMK2AQ9UQM7 478 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 CARD8Q9Y2G2 431 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 GMEB1Q9Y692 573 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 PCNX3Q9H6A9 2034 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 ANKHD1Q8IWZ3 2542 aaKnown RBP8.46□□□□□ -1.05
LDLR-211ENST00000560173 PHF3Q92576 2039 aaKnown RBP8.46□□□□□ -1.05
LDLR-211ENST00000560173 KDM4EB2RXH2 506 aaPredicted RBP8.46□□□□□ -1.06
LDLR-211ENST00000560173 SHISA8B8ZZ34 492 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 ANKRD65E5RJM6 399 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 LINC01387J3KSC0 135 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 GTPBP1O00178 669 aaKnown RBP8.46□□□□□ -1.06
LDLR-211ENST00000560173 CLIC1O00299 241 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 ANGPT2O15123 496 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 EIF4E2O60573 245 aaKnown RBP8.46□□□□□ -1.06
LDLR-211ENST00000560173 SNRPB2P08579 225 aaKnown RBP8.46□□□□□ -1.06
LDLR-211ENST00000560173 TFPTP0C1Z6 253 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 T-ENOLP0DO92 83 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 NR2F1P10589 423 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 UBL4AP11441 157 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 BMP2P12643 396 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 ZNF708P17019 499 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 ZNF17P17021 662 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 RPS4Y1P22090 263 aaKnown RBP8.46□□□□□ -1.06
LDLR-211ENST00000560173 PSMA4P25789 261 aaKnown RBP8.46□□□□□ -1.06
LDLR-211ENST00000560173 ADH7P40394 386 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 ZNF41P51814 821 aaPredicted RBP8.46□□□□□ -1.06
LDLR-211ENST00000560173 SUMO3P55854 103 aaPredicted RBP8.46□□□□□ -1.06
LDLR-211ENST00000560173 CLDN18P56856 261 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 DSTNP60981 165 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 MXRA7P84157 204 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 PLAURQ03405 335 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 PMPCAQ10713 525 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 FADDQ13158 208 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 SKP2Q13309 424 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 RGNQ15493 299 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 CDSNQ15517 529 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 BCL2A1Q16548 175 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 XKRXQ6PP77 449 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 DLEU7Q6UYE1 221 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 LRRC74BQ6ZQY2 392 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 SEM1Q6ZVN7 128 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 EIF3MQ7L2H7 374 aaKnown RBP8.46□□□□□ -1.06
LDLR-211ENST00000560173 MAMDC2Q7Z304 686 aaPredicted RBP8.46□□□□□ -1.06
LDLR-211ENST00000560173 HMGN2P46Q86SG4 172 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 DHDDSQ86SQ9 333 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 DPP10Q8N608 796 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 FAM71CQ8NEG0 241 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 TOR1AIP2Q8NFQ8 470 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 OR5M1Q8NGP8 315 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 RND1Q92730 232 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 SLC7A6OSQ96CW6 309 aaPredicted RBP8.46□□□□□ -1.06
LDLR-211ENST00000560173 ZG16BQ96DA0 208 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 ARSGQ96EG1 525 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 TUBA1CQ9BQE3 449 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 PIGQQ9BRB3 760 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 CPPED1Q9BRF8 314 aaPredicted RBP8.46□□□□□ -1.06
LDLR-211ENST00000560173 QRSL1Q9H0R6 528 aaKnown RBP8.46□□□□□ -1.06
LDLR-211ENST00000560173 RAD21L1Q9H4I0 556 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 IKZF5Q9H5V7 419 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 RUBCNLQ9H714 662 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 ARL8BQ9NVJ2 186 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 THUMPD1Q9NXG2 353 aaKnown RBP8.46□□□□□ -1.06
LDLR-211ENST00000560173 VAPAQ9P0L0 249 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 P2RX2Q9UBL9 471 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 PRDM4Q9UKN5 801 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 VDAC3Q9Y277 283 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 L3MBTL1Q9Y468 752 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 ADGRG4Q8IZF6 3080 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 DSPPQ9NZW4 1301 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 OTOGQ6ZRI0 2925 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 C2CD3Q4AC94 2353 aa8.46□□□□□ -1.06
LDLR-211ENST00000560173 AGAP5A6NIR3 686 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 CD8B2A6NJW9 211 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 B2RBV5 119 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 FAM47E-STBD1D6RA91 191 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 H0Y3Z8 333 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 ZNF264O43296 627 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 DNAJA2O60884 412 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 BCAS1O75363 584 aaPredicted RBP8.45□□□□□ -1.06
LDLR-211ENST00000560173 EPPINO95925 133 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 CSTAP01040 98 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 BCHEP06276 602 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 NUDT7P0C024 238 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 LINGO3P0C6S8 592 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 PEPDP12955 493 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 PPIBP23284 216 aaKnown RBP8.45□□□□□ -1.06
LDLR-211ENST00000560173 PGM1P36871 562 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 P2RX1P51575 399 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 CLDN15P56746 228 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 SRYQ05066 204 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 KLF10Q13118 480 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 ART3Q13508 389 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 CYLC2Q14093 348 aaPredicted RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms