RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 PTGDSP41222 190 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 PPICP45877 212 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 MLF1P58340 268 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 GPR85P60893 370 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 VLDLRP98155 873 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 TLE3Q04726 772 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 RBBP4Q09028 425 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 BIKQ13323 160 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 DUSP7Q16829 419 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.77□□□□□ -1.65
SPG11-220ENST00000559933 ACER2Q5QJU3 275 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 MRPL2Q5T653 305 aaKnown RBP4.77□□□□□ -1.65
SPG11-220ENST00000559933 OR5M10Q6IEU7 315 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 HMBOX1Q6NT76 420 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 ERICH5Q6P6B1 374 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 CCDC81Q6ZN84 652 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 MDGA2Q7Z553 956 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 ZNF227Q86WZ6 799 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 ARMC8Q8IUR7 673 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 KBTBD2Q8IY47 623 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 ZNF619Q8N2I2 560 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 GALNT16Q8N428 558 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 CLEC1AQ8NC01 280 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 FDCSPQ8NFU4 85 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 OR52P1PQ8NH57 321 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 NUBPLQ8TB37 319 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 SPPL2AQ8TCT8 520 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 SLC26A7Q8TE54 656 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 GRHL3Q8TE85 626 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 CANT1Q8WVQ1 401 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 ZCCHC14Q8WYQ9 949 aaKnown RBP4.77□□□□□ -1.65
SPG11-220ENST00000559933 CNOT9Q92600 299 aaKnown RBP4.77□□□□□ -1.65
SPG11-220ENST00000559933 DIO2Q92813 273 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 DNAJA3Q96EY1 480 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 SLC47A1Q96FL8 570 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 SH3YL1Q96HL8 342 aaPredicted RBP4.77□□□□□ -1.65
SPG11-220ENST00000559933 LRGUKQ96M69 825 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 SIGLEC12Q96PQ1 595 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 TRNT1Q96Q11 434 aaKnown RBP4.77□□□□□ -1.65
SPG11-220ENST00000559933 NPAS1Q99742 590 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 SPATA9Q9BWV2 254 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 CDADC1Q9BWV3 514 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 ING2Q9H160 280 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 MMADHCQ9H3L0 296 aaPredicted RBP4.77□□□□□ -1.65
SPG11-220ENST00000559933 ZNF552Q9H707 407 aaPredicted RBP4.77□□□□□ -1.65
SPG11-220ENST00000559933 DCAF13Q9NV06 445 aaKnown RBP4.77□□□□□ -1.65
SPG11-220ENST00000559933 EXD2Q9NVH0 621 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 LUZP4Q9P127 313 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 RHCGQ9UBD6 479 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 TNFRSF10DQ9UBN6 386 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 NKX1-2Q9UD57 310 aaPredicted RBP4.77□□□□□ -1.65
SPG11-220ENST00000559933 ABCG2Q9UNQ0 655 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 ZNF451Q9Y4E5 1061 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 NPFFR2Q9Y5X5 522 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 CHCHD2Q9Y6H1 151 aaPredicted RBP4.77□□□□□ -1.65
SPG11-220ENST00000559933 ACACAQ13085 2346 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 EML6Q6ZMW3 1958 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 ATMQ13315 3056 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 BOD1L1Q8NFC6 3051 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 BSNQ9UPA5 3926 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 A0A0G2JPF8 293 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 TCRBV3S1A0A5B6 114 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 DHRS12A0PJE2 317 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 TMEM247A6NEH6 219 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 DUXAA6NLW8 204 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 CPSF4LA6NMK7 179 aaKnown RBP4.76□□□□□ -1.65
SPG11-220ENST00000559933 HNRNPCL2B2RXH8 293 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 HNRNPCL3B7ZW38 293 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 NPIPB9F8W1W9 429 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 ACOX3O15254 700 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 CDC40O60508 579 aaKnown RBP eCLIP4.76□□□□□ -1.65
SPG11-220ENST00000559933 TPST2O60704 377 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 FKBP6O75344 327 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 WDPCPO95876 746 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 FESP07332 822 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 CD63P08962 238 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 UBTFL6P0CB48 400 aaPredicted RBP4.76□□□□□ -1.65
SPG11-220ENST00000559933 HNRNPCL4P0DMR1 293 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 EVI2BP34910 448 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 KRT20P35900 424 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 KCNJ5P48544 419 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 DNASE1L1P49184 302 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 ANXA11P50995 505 aaKnown RBP4.76□□□□□ -1.65
SPG11-220ENST00000559933 SSR4P51571 173 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 CCR4P51679 360 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 IST1P53990 364 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 ATP12AP54707 1039 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 SESN3P58005 492 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 LINC00310P59036 64 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 ACTR3P61158 418 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 EEF1A1P68104 462 aaKnown RBP4.76□□□□□ -1.65
SPG11-220ENST00000559933 CXADRP78310 365 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 KCNJ10P78508 379 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 ZNF117Q03924 483 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 TRAP1Q12931 704 aaKnown RBP4.76□□□□□ -1.65
SPG11-220ENST00000559933 AIMP2Q13155 320 aaKnown RBP4.76□□□□□ -1.65
SPG11-220ENST00000559933 TUBA3CQ13748 450 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 VEZF1Q14119 521 aa4.76□□□□□ -1.65
SPG11-220ENST00000559933 GANABQ14697 944 aaKnown RBP4.76□□□□□ -1.65
SPG11-220ENST00000559933 RCN1Q15293 331 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms