RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 TM9SF2Q99805 663 aa12.36□□□□□ -0.43
SHMT2-219ENST00000555563 SPOCK3Q9BQ16 436 aa12.36□□□□□ -0.43
SHMT2-219ENST00000555563 TREX2Q9BQ50 279 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-219ENST00000555563 PINK1Q9BXM7 581 aa12.36□□□□□ -0.43
SHMT2-219ENST00000555563 TRIM8Q9BZR9 551 aa12.36□□□□□ -0.43
SHMT2-219ENST00000555563 PAIP1Q9H074 479 aaKnown RBP12.36□□□□□ -0.43
SHMT2-219ENST00000555563 SAP130Q9H0E3 1048 aa12.36□□□□□ -0.43
SHMT2-219ENST00000555563 TMEM185BQ9H7F4 350 aa12.36□□□□□ -0.43
SHMT2-219ENST00000555563 TPT1P8Q9HAU6 139 aa12.36□□□□□ -0.43
SHMT2-219ENST00000555563 CCDC167Q9P0B6 97 aa12.36□□□□□ -0.43
SHMT2-219ENST00000555563 ZNF629Q9UEG4 869 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-219ENST00000555563 LIPT1Q9Y234 373 aa12.36□□□□□ -0.43
SHMT2-219ENST00000555563 CACNA1DQ01668 2161 aa12.36□□□□□ -0.43
SHMT2-219ENST00000555563 SLC22A20A6NK97 555 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 EIF4E2O60573 245 aaKnown RBP12.35□□□□□ -0.43
SHMT2-219ENST00000555563 BCAS1O75363 584 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-219ENST00000555563 RCBTB2O95199 551 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 CSTAP01040 98 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 UBTFL6P0CB48 400 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-219ENST00000555563 ETFAP13804 333 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 CD1EP15812 388 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 PRKCAP17252 672 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 HOXB9P17482 250 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-219ENST00000555563 IL11P20809 199 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 CTSSP25774 331 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 SHC1P29353 583 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 ASCL1P50553 236 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 EEFSECP57772 596 aaKnown RBP12.35□□□□□ -0.43
SHMT2-219ENST00000555563 PLAURQ03405 335 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 FGFBP1Q14512 234 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 TOMM34Q15785 309 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-219ENST00000555563 CTU2Q2VPK5 515 aaKnown RBP12.35□□□□□ -0.43
SHMT2-219ENST00000555563 AGKQ53H12 422 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 HSP90B2PQ58FF3 399 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 AP1ARQ63HQ0 302 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 ARFGAP2Q8N6H7 521 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 FAM71CQ8NEG0 241 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 TOR1AIP2Q8NFQ8 470 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 OR5W2Q8NH69 310 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 GPR119Q8TDV5 335 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 OIT3Q8WWZ8 545 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 FIG4Q92562 907 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 ZNF524Q96C55 264 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 INTS12Q96CB8 462 aaKnown RBP12.35□□□□□ -0.43
SHMT2-219ENST00000555563 ZG16BQ96DA0 208 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 SPDL1Q96EA4 605 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 ZFP3Q96NJ6 502 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 SIKE1Q9BRV8 207 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 SFXN3Q9BWM7 321 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 SLC38A1Q9H2H9 487 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 ZNF385DQ9H6B1 395 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 RUBCNLQ9H714 662 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 SLC52A3Q9NQ40 469 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 PCDHB14Q9Y5E9 798 aa12.35□□□□□ -0.43
SHMT2-219ENST00000555563 CELSR2Q9HCU4 2923 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 A0A096LPI6 279 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 A0A0G2JND7 137 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 CLDN24A6NM45 220 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 EEF1E1-BLOC1S5C9J1V9 151 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 EIF1AYO14602 144 aaKnown RBP12.34□□□□□ -0.43
SHMT2-219ENST00000555563 EEF1E1O43324 174 aaKnown RBP12.34□□□□□ -0.43
SHMT2-219ENST00000555563 CYP7B1O75881 506 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 IL18BPO95998 194 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 OPN1LWP04000 364 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 NR2F1P10589 423 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 ME2P23368 584 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 ELK4P28324 431 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 OPRM1P35372 400 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 PGM1P36871 562 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 EIF1P41567 113 aaKnown RBP12.34□□□□□ -0.43
SHMT2-219ENST00000555563 CRATP43155 626 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 MAGEA8P43361 318 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 RAC1P63000 192 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 IRX1P78414 480 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-219ENST00000555563 PON3Q15166 354 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 QPRTQ15274 297 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 MAPK11Q15759 364 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 LRRC74BQ6ZQY2 392 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 EIF3MQ7L2H7 374 aaKnown RBP12.34□□□□□ -0.43
SHMT2-219ENST00000555563 P4HA3Q7Z4N8 544 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 MSRB3Q8IXL7 192 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 OR10D3Q8NH80 312 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 FBXO27Q8NI29 283 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 FNDC9Q8TBE3 224 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 ADGRG7Q96K78 797 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 LAT2Q9GZY6 243 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 MED4Q9NPJ6 270 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 FGFR1OP2Q9NVK5 253 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 TMEM45AQ9NWC5 275 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 SLC25A37Q9NYZ2 338 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 P2RX2Q9UBL9 471 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 SLC35A3Q9Y2D2 325 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 ZNF175Q9Y473 711 aa12.34□□□□□ -0.43
SHMT2-219ENST00000555563 GPC6Q9Y625 555 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-219ENST00000555563 CRYBG3Q68DQ2 2970 aa12.33□□□□□ -0.43
SHMT2-219ENST00000555563 A0A1W2PNV4 684 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 AGAP5A6NIR3 686 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 TNFSF11O14788 317 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 DNAJA2O60884 412 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 NTN1O95631 604 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms