RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 SLC48A1Q6P1K1 146 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 C16orf87Q6PH81 154 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 FIGLAQ6QHK4 219 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 ASPGQ86U10 573 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 TOR1AIP2Q8NFQ8 470 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 FLVCR1-AS1Q8TAF5 88 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 NT5CQ8TCD5 201 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 UTP15Q8TED0 518 aaKnown RBP10.27□□□□□ -0.77
SHMT2-216ENST00000554975 APH1BQ8WW43 257 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 OTUB1Q96FW1 271 aaPredicted RBP10.27□□□□□ -0.77
SHMT2-216ENST00000554975 TAAR6Q96RI8 345 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 TEX12Q9BXU0 123 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 UCK2Q9BZX2 261 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 NAA50Q9GZZ1 169 aaKnown RBP10.27□□□□□ -0.77
SHMT2-216ENST00000554975 SPRTNQ9H040 489 aaPredicted RBP10.27□□□□□ -0.77
SHMT2-216ENST00000554975 OR51I1Q9H343 314 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 GLIPR2Q9H4G4 154 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 NMNAT1Q9HAN9 279 aaPredicted RBP10.27□□□□□ -0.77
SHMT2-216ENST00000554975 MS4A12Q9NXJ0 267 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 KLHL28Q9NXS3 571 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 TRPC4Q9UBN4 977 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 SH3BGRL2Q9UJC5 107 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 PLCL2Q9UPR0 1127 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 ZNF780BQ9Y6R6 833 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 HCFC1P51610 2035 aa10.27□□□□□ -0.77
SHMT2-216ENST00000554975 TRGV8A0A0C4DH27 118 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 A0A0J9YVX5 310 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 A0A1W2PRQ8 180 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 H3BMH7 237 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 CCL21O00585 134 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 HAT1O14929 419 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 AIFM1O95831 613 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 INHBBP09529 407 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 MSL3P1P0C860 447 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 ACVR2AP27037 513 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 TLX1P31314 330 aaPredicted RBP10.26□□□□□ -0.77
SHMT2-216ENST00000554975 OR1E2P47887 323 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 CLK1P49759 484 aaKnown RBP10.26□□□□□ -0.77
SHMT2-216ENST00000554975 SNRPGP62308 76 aaKnown RBP10.26□□□□□ -0.77
SHMT2-216ENST00000554975 Q0VFX4 171 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 SLAMF1Q13291 335 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 DGCR6Q14129 220 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 CTF1Q16619 201 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 EIPR1Q53HC9 387 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 SLX4IPQ5VYV7 408 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 B3GNTL1Q67FW5 361 aaPredicted RBP10.26□□□□□ -0.77
SHMT2-216ENST00000554975 FAM180AQ6UWF9 173 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 CASP12Q6UXS9 341 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 CD300LDQ6UXZ3 194 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 USP43Q70EL4 1123 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 UBE3DQ7Z6J8 389 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 TSEN54Q7Z6J9 526 aaKnown RBP10.26□□□□□ -0.77
SHMT2-216ENST00000554975 PAQR7Q86WK9 346 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 AMER2Q8N7J2 671 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 BCORP1Q8N888 145 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 ACOT4Q8N9L9 421 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 SMYD1Q8NB12 490 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 CAMKVQ8NCB2 501 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 OR9Q2Q8NGE9 314 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 OR2Y1Q8NGV0 311 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 MS4A4EQ96PG1 132 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 TREX2Q9BQ50 279 aaPredicted RBP10.26□□□□□ -0.77
SHMT2-216ENST00000554975 NDC1Q9BTX1 674 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 POLR2J2Q9GZM3 115 aaKnown RBP10.26□□□□□ -0.77
SHMT2-216ENST00000554975 POLR2J3Q9H1A7 115 aaKnown RBP10.26□□□□□ -0.77
SHMT2-216ENST00000554975 ATP13A2Q9NQ11 1180 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 RASSF1Q9NS23 344 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 CCDC59Q9P031 241 aaKnown RBP10.26□□□□□ -0.77
SHMT2-216ENST00000554975 FBXL4Q9UKA2 621 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 FLNAP21333 2647 aaKnown RBP10.26□□□□□ -0.77
SHMT2-216ENST00000554975 RTTNQ86VV8 2226 aa10.26□□□□□ -0.77
SHMT2-216ENST00000554975 IGKV1-8A0A0C4DH67 115 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 ZSCAN9O15535 394 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-216ENST00000554975 OR10H3O60404 316 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 PFDN1O60925 122 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 NME6O75414 186 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-216ENST00000554975 WISP2O76076 250 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 SOX30O94993 753 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 C1QCP02747 245 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 CD36P16671 472 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 GABRB1P18505 474 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 SKP1P63208 163 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 TNFRSF17Q02223 184 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 TLE4Q04727 773 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 AIMP2Q13155 320 aaKnown RBP10.25□□□□□ -0.77
SHMT2-216ENST00000554975 TMED1Q13445 227 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 GANABQ14697 944 aaKnown RBP10.25□□□□□ -0.77
SHMT2-216ENST00000554975 TIGD6Q17RP2 521 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 RPS26P11Q5JNZ5 115 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-216ENST00000554975 FRMPD2BQ6IN97 320 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 ZNF770Q6IQ21 691 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-216ENST00000554975 MRPL14Q6P1L8 145 aaKnown RBP10.25□□□□□ -0.77
SHMT2-216ENST00000554975 TUBA3EQ6PEY2 450 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 KLHL17Q6TDP4 642 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 GFRALQ6UXV0 394 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 ZNF793Q6ZN11 406 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 DEF8Q6ZN54 512 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 ABHD13Q7L211 337 aa10.25□□□□□ -0.77
SHMT2-216ENST00000554975 CCDC71Q8IV32 467 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-216ENST00000554975 MCATQ8IVS2 390 aaKnown RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms