RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 ZIM3Q96PE6 472 aa11.4□□□□□ -0.58
LINC00643-202ENST00000553426 TACO1Q9BSH4 297 aaKnown RBP11.4□□□□□ -0.58
LINC00643-202ENST00000553426 HDHD5Q9BXW7 423 aa11.4□□□□□ -0.58
LINC00643-202ENST00000553426 OR10A4Q9H209 315 aa11.4□□□□□ -0.58
LINC00643-202ENST00000553426 C12orf49Q9H741 205 aa11.4□□□□□ -0.58
LINC00643-202ENST00000553426 GPATCH2Q9NW75 528 aa11.4□□□□□ -0.58
LINC00643-202ENST00000553426 NOP53Q9NZM5 478 aaKnown RBP11.4□□□□□ -0.58
LINC00643-202ENST00000553426 CARD8Q9Y2G2 431 aa11.4□□□□□ -0.58
LINC00643-202ENST00000553426 GPR52Q9Y2T5 361 aa11.4□□□□□ -0.58
LINC00643-202ENST00000553426 DTNAQ9Y4J8 743 aa11.4□□□□□ -0.58
LINC00643-202ENST00000553426 NPIPA5A0A0B4J1W7 369 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 NPIPA7E9PJI5 369 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 ZNF264O43296 627 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 PRKD3O94806 890 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 NPIPA8P0DM63 369 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 G6PDP11413 515 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 MATN1P21941 496 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 AGTR1P30556 359 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 CLDN8P56748 225 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 EMX2Q04743 252 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 CBFBQ13951 182 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 ZNF239Q16600 458 aaKnown RBP11.39□□□□□ -0.59
LINC00643-202ENST00000553426 TMEM176BQ3YBM2 270 aaPredicted RBP11.39□□□□□ -0.59
LINC00643-202ENST00000553426 CBLN3Q6UW01 205 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 PRSS57Q6UWY2 283 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 STAC2Q6ZMT1 411 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 FCRLAQ7L513 359 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 WFDC8Q8IUA0 241 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 RIMKLAQ8IXN7 391 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 KIRREL3Q8IZU9 778 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 SLC43A2Q8N370 569 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 ATP6V1C2Q8NEY4 427 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 VPS37AQ8NEZ2 397 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 STEAP2Q8NFT2 490 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 OR5AK3PQ8NH89 298 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 RFWD2Q8NHY2 731 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 GPR119Q8TDV5 335 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 ZFP90Q8TF47 636 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 ROBO4Q8WZ75 1007 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 OR7D2Q96RA2 312 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 NPAS1Q99742 590 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 BDH2Q9BUT1 245 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 ACTR6Q9GZN1 396 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 GP6Q9HCN6 339 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 NGBQ9NPG2 151 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 EXD2Q9NVH0 621 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 ICAM5Q9UMF0 924 aa11.39□□□□□ -0.59
LINC00643-202ENST00000553426 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.38□□□□□ -0.59
LINC00643-202ENST00000553426 RGS16O15492 202 aaPredicted RBP11.38□□□□□ -0.59
LINC00643-202ENST00000553426 EIF4E2O60573 245 aaKnown RBP11.38□□□□□ -0.59
LINC00643-202ENST00000553426 STX11O75558 287 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 SNUPNO95149 360 aaKnown RBP11.38□□□□□ -0.59
LINC00643-202ENST00000553426 AGR2O95994 175 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 MYZAPP0CAP1 466 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 UBL4AP11441 157 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 PSMB1P20618 241 aaKnown RBP11.38□□□□□ -0.59
LINC00643-202ENST00000553426 C21orf58P58505 322 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 HBA1P69905 142 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 LTBQ06643 244 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 SELENBP1Q13228 472 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 KRT71Q3SY84 523 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 ATAD3BQ5T9A4 648 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 CLEC9AQ6UXN8 241 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 C16orf62Q7Z3J2 963 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 C6orf120Q7Z4R8 191 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 OR5W2Q8NH69 310 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 RNF128Q8TEB7 428 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 AENQ8WTP8 325 aaKnown RBP11.38□□□□□ -0.59
LINC00643-202ENST00000553426 TMEM171Q8WVE6 324 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 PERPQ96FX8 193 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 MARK4Q96L34 752 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 HS3ST6Q96QI5 342 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 USB1Q9BQ65 265 aaKnown RBP11.38□□□□□ -0.59
LINC00643-202ENST00000553426 TMEM109Q9BVC6 243 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 NMUR2Q9GZQ4 415 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 CXorf56Q9H5V9 222 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 SERINC1Q9NRX5 453 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 ASIC5Q9NY37 505 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 KLHL13Q9P2N7 655 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 KCNE3Q9Y6H6 103 aa11.38□□□□□ -0.59
LINC00643-202ENST00000553426 FBN3Q75N90 2809 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 WDR91A4D1P6 747 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 SERINC4A6NH21 518 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 RNASET2O00584 256 aaKnown RBP11.37□□□□□ -0.59
LINC00643-202ENST00000553426 BIRC5O15392 142 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 TYROBPO43914 113 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 TMCC2O75069 709 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 CYP7B1O75881 506 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 SERPINE1P05121 402 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 THBDP07204 575 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 YES1P07947 543 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 CREB1P16220 341 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 PRKCAP17252 672 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 IL32P24001 234 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 ARRB2P32121 409 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 RNF144AP50876 292 aaPredicted RBP11.37□□□□□ -0.59
LINC00643-202ENST00000553426 GPR68Q15743 365 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 CHI3L2Q15782 390 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 PDCD2Q16342 344 aaPredicted RBP11.37□□□□□ -0.59
LINC00643-202ENST00000553426 PDZK1Q5T2W1 519 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms