RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 UBQLN3Q9H347 655 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 MRPL15Q9P015 296 aaKnown RBP5.18□□□□□ -1.58
LIMA1-215ENST00000552823 PCDHGB6Q9Y5F9 930 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 IER3IP1Q9Y5U9 82 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 DMDP11532 3685 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 LTBP2Q14767 1821 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 SPTY2D1-AS1A0A0U1RR47 76 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 A0A1B0GWA3 101 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 A0A1W2PRQ8 180 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 SH3D21A4FU49 640 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 OR5K3A6NET4 321 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 FABP12A6NFH5 140 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 UNC119BA6NIH7 251 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 GALR3O60755 368 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-215ENST00000552823 CSTAP01040 98 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 APOA1P02647 267 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF12P17014 697 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 SOX2P48431 317 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 PPP5CP53041 499 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 COPZ1P61923 177 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 IL18Q14116 193 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 IRF3Q14653 427 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 BAK1Q16611 211 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 DHRS4L2Q6PKH6 230 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 SLC36A4Q6YBV0 504 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF367Q7RTV3 350 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 NRARPQ7Z6K4 114 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 LINC00471Q8N535 108 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 RFLNBQ8N5W9 214 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 SIRT6Q8N6T7 355 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 OR2T33Q8NG76 320 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 S100ZQ8WXG8 99 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 ACOT11Q8WXI4 607 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-215ENST00000552823 DIO2Q92813 273 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 BPIFA2Q96DR5 249 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 ZFP3Q96NJ6 502 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 MND1Q9BWT6 205 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 TEX12Q9BXU0 123 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 NT5DC2Q9H857 520 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 SMURF1Q9HCE7 757 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 TXNL4BQ9NX01 149 aaKnown RBP5.18□□□□□ -1.58
LIMA1-215ENST00000552823 SIDT1Q9NXL6 827 aaKnown RBP5.18□□□□□ -1.58
LIMA1-215ENST00000552823 TAS2R7Q9NYW3 318 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 ENOPH1Q9UHY7 261 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 OSGIN1Q9UJX0 560 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 PILRAQ9UKJ1 303 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 SLC6A5Q9Y345 797 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 MED31Q9Y3C7 131 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 MTCH2Q9Y6C9 303 aa5.18□□□□□ -1.58
LIMA1-215ENST00000552823 HYKKA2RU49 373 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 TMEM150CB9EJG8 249 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 SLC30A4O14863 429 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 OIP5O43482 229 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 HPGDSO60760 199 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CBFA2T3O75081 653 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 KCNK2O95069 426 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 IGKV1D-16P01601 117 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 IL9P15248 144 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 TBXA2RP21731 343 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 BCKDHBP21953 392 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 SHC1P29353 583 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 RABIFP47224 123 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 DHPSP49366 369 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 OR12D2P58182 307 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 MRPS21P82921 87 aaKnown RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 FABP5Q01469 135 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 TSPAN31Q12999 210 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CBX3Q13185 183 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 SQSTM1Q13501 440 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 ENPP2Q13822 863 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 PGGHGQ32M88 737 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 C1orf94Q6P1W5 598 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 METAP1DQ6UB28 335 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CBLN3Q6UW01 205 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 ESPNLQ6ZVH7 1005 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 TRIM69Q86WT6 500 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 LYSMD2Q8IV50 215 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF619Q8N2I2 560 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF511Q8NB15 262 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 SMRP1Q8NCR6 262 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 OR51Q1Q8NH59 317 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 OR4C6Q8NH72 309 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CEP76Q8TAP6 659 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 FCGR1BQ92637 280 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 UFD1Q92890 307 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 RASD2Q96D21 266 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CRELD1Q96HD1 420 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 SLC30A2Q9BRI3 323 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 TAPBPLQ9BX59 468 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 HDHD2Q9H0R4 259 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 LMAN2LQ9H0V9 348 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 BRD7Q9NPI1 651 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 NKIRAS2Q9NYR9 191 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 KCND3Q9UK17 655 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 LIPT1Q9Y234 373 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 POLEQ07864 2286 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 TRAPPC13A5PLN9 417 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 C17orf105B2RV13 164 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 PRR23D1E9PI22 279 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CLDN4O14493 209 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms