RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 FLRT2O43155 660 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 ERI3O43414 337 aaKnown RBP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 SMAD6O43541 496 aaKnown RBP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 B3GALT2O43825 422 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 CACNG3O60359 315 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 MMP2P08253 660 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 ATXN1LP0C7T5 689 aaKnown RBP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 PVALBP20472 110 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 ITPKBP27987 946 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 AHRP35869 848 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 BMPR1AP36894 532 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 LGALS4P56470 323 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 EIF4EBP2Q13542 120 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 GRK1Q15835 563 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 GPR33Q49SQ1 333 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 FUT10Q6P4F1 479 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 SLC36A4Q6YBV0 504 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 CBLL1Q75N03 491 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 LRRC70Q7Z2Q7 622 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 PAQR7Q86WK9 346 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 GRAMD2AQ8IUY3 354 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 LACC1Q8IV20 430 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF676Q8N7Q3 588 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 ZBTB44Q8NCP5 570 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 TRMT10AQ8TBZ6 339 aaKnown RBP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 FOXRED1Q96CU9 486 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 ARSGQ96EG1 525 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 HRASLS5Q96KN8 279 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 PKMYT1Q99640 499 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 MCHR1Q99705 422 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 CPPED1Q9BRF8 314 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 TMEM175Q9BSA9 504 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 BTBD1Q9H0C5 482 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 LRRN3Q9H3W5 708 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 CLMPQ9H6B4 373 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 NARFLQ9H6Q4 476 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 RBFOX1Q9NWB1 397 aaKnown RBP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 QPCTLQ9NXS2 382 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 KCNN3Q9UGI6 736 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 TRPS1Q9UHF7 1281 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 SPACA6W5XKT8 324 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 LRRTM2O43300 516 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 RAD1O60671 282 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 OAZ2O95190 189 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 IFNGP01579 166 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 UCHL1P09936 223 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 CD40P25942 277 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 PTH2RP49190 550 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 CLDN12P56749 244 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 PITPNAQ00169 270 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 GNA13Q14344 377 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 UPP1Q16831 310 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 CTSL3PQ5NE16 218 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 C18orf63Q68DL7 685 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 KDM4DQ6B0I6 523 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 COMMD6Q7Z4G1 85 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 TMEM173Q86WV6 379 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 PDZD9Q8IXQ8 264 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 LNX2Q8N448 690 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 TEX26Q8N6G2 289 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 ACBD7Q8N6N7 88 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 OR7G3Q8NG95 312 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 GPR150Q8NGU9 434 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 SETD6Q8TBK2 473 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 KXD1Q9BQD3 176 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 RTP3Q9BQQ7 232 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 CLSTN3Q9BQT9 956 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 G6PC3Q9BUM1 346 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 MTG2Q9H4K7 406 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 EGLN3Q9H6Z9 239 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 RDH14Q9HBH5 336 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 SIRT5Q9NXA8 310 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 IL17CQ9P0M4 197 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 GSKIPQ9P0R6 139 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 P2RX2Q9UBL9 471 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 SCML2Q9UQR0 700 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 X6R8D5 127 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 TP53BP1Q12888 1972 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 A0A0G2JMP0 313 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 A0A0X1KG70 313 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 FEZF1A0PJY2 475 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 ACOT7O00154 380 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 CACNB4O00305 520 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 PDCD5O14737 125 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF780AO75290 641 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 TUSC2O75896 110 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 SLC22A5O76082 557 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 ALPPP05187 535 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 GNSP15586 552 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF250P15622 560 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 TIA1P31483 386 aaKnown RBP eCLIP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 HMGCLP35914 325 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 GBX2P52951 348 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-203ENST00000547825 AP1S2P56377 157 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 RBBP4Q09028 425 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 HYAL1Q12794 435 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 P2RY14Q15391 338 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 SPIN4Q56A73 249 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 CRTC1Q6UUV9 634 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 C3P1Q6ZMU1 363 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms