RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 SERTM1A2A2V5 107 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 OXSR1O95747 527 aaPredicted RBP11.35□□□□□ -0.59
USP28-212ENST00000544750 KRT6AP02538 564 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 KRT6BP04259 564 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 LINGO3P0C6S8 592 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 PABPC4LP0CB38 370 aaKnown RBP11.35□□□□□ -0.59
USP28-212ENST00000544750 ZNF16P17020 682 aaPredicted RBP11.35□□□□□ -0.59
USP28-212ENST00000544750 IGFBP5P24593 272 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 HMOX2P30519 316 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 ALDH3A1P30838 453 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 GSTM5P46439 218 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 RFX3P48380 749 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 KRT6CP48668 564 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 NCBP2P52298 156 aaKnown RBP eCLIP11.35□□□□□ -0.59
USP28-212ENST00000544750 MANFP55145 182 aaKnown RBP11.35□□□□□ -0.59
USP28-212ENST00000544750 CDH11P55287 796 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 CARD18P57730 90 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 RNPS1Q15287 305 aaKnown RBP11.35□□□□□ -0.59
USP28-212ENST00000544750 KRT71Q3SY84 523 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 SPIN4Q56A73 249 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 PDSS1Q5T2R2 415 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 AGAP6Q5VW22 663 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 CYB5R2Q6BCY4 276 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 CLEC2AQ6UVW9 174 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 BHLHA15Q7RTS1 189 aaPredicted RBP11.35□□□□□ -0.59
USP28-212ENST00000544750 CCDC63Q8NA47 563 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 METTL6Q8TCB7 284 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 TCP10LQ8TDR4 215 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 PIK3R3Q92569 461 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 GATA5Q9BWX5 397 aaPredicted RBP11.35□□□□□ -0.59
USP28-212ENST00000544750 MID2Q9UJV3 735 aa11.35□□□□□ -0.59
USP28-212ENST00000544750 TTC36A6NLP5 189 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 E7EQL1 145 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 ABCD4O14678 606 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 NDUFB5O43674 189 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 LMX1BO60663 402 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 ULK1O75385 1050 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 NKX2-2O95096 273 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 PGM3O95394 542 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 YES1P07947 543 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 EDNRAP25101 427 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 ARRB2P32121 409 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 TTKP33981 857 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 GABRA3P34903 492 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 ETV4P43268 484 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 NAA20P61599 178 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 ACSM2AQ08AH3 577 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 PPA1Q15181 289 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 ZNHIT3Q15649 155 aaPredicted RBP11.34□□□□□ -0.59
USP28-212ENST00000544750 ACSM2BQ68CK6 577 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 FAM71E1Q6IPT2 247 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 Q6ZSR9 355 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 Q6ZT83 130 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 FCRLAQ7L513 359 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 ZAR1Q86SH2 424 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 LILRA2Q8N149 483 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 ZNF525Q8N782 197 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 FAM110BQ8TC76 370 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 C10orf105Q8TEF2 133 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 CPNE4Q96A23 557 aaPredicted RBP11.34□□□□□ -0.59
USP28-212ENST00000544750 ZBTB9Q96C00 473 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 ADAD1Q96M93 576 aaKnown RBP11.34□□□□□ -0.59
USP28-212ENST00000544750 AMDHD1Q96NU7 426 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 EBPLQ9BY08 206 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 COQ10BQ9H8M1 238 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 BCO1Q9HAY6 547 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 C3orf14Q9HBI5 128 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 HHATLQ9HCP6 504 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 CBLN4Q9NTU7 201 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 DDX18Q9NVP1 670 aaKnown RBP11.34□□□□□ -0.59
USP28-212ENST00000544750 TENM1Q9UKZ4 2725 aa11.34□□□□□ -0.59
USP28-212ENST00000544750 SLC35F4A4IF30 521 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 TRIM13O60858 407 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 LYZL6O75951 148 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 KCNH1O95259 989 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 ANXA4P09525 319 aaPredicted RBP11.33□□□□□ -0.6
USP28-212ENST00000544750 SRD5A1P18405 259 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 COX5AP20674 150 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 ME2P23368 584 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 ELK4P28324 431 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 SFTPDP35247 375 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 OR3A2P47893 321 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 ZNF41P51814 821 aaPredicted RBP11.33□□□□□ -0.6
USP28-212ENST00000544750 ZNF763Q0D2J5 394 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 C2orf80Q0P641 193 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 CFAP157Q5JU67 520 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 TIMM23BQ5SRD1 257 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 BEND6Q5SZJ8 279 aaPredicted RBP11.33□□□□□ -0.6
USP28-212ENST00000544750 CEP85LQ5SZL2 805 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 CLEC6AQ6EIG7 209 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 GATSQ8NAP1 163 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 OR6Y1Q8NGX8 325 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 HTRA1Q92743 480 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 PROX1Q92786 737 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 DHRS9Q9BPW9 319 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 IQCGQ9H095 443 aaKnown RBP11.33□□□□□ -0.6
USP28-212ENST00000544750 CXorf36Q9H7Y0 433 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 MANSC1Q9H8J5 431 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 PRSS50Q9UI38 385 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 CCL27Q9Y4X3 112 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms