RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 SSX6Q7RTT6 188 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 CAMKVQ8NCB2 501 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 PTP4A1Q93096 173 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 BPIFA2Q96DR5 249 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 FOXN4Q96NZ1 517 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 PITHD1Q9GZP4 211 aaPredicted RBP15.66■□□□□ 0.1
USP28-208ENST00000540438 MRPS7Q9Y2R9 242 aaKnown RBP15.66■□□□□ 0.1
USP28-208ENST00000540438 A0A1W2PRG6 482 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 BMP7P18075 431 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 CASP3P42574 277 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 OR12D2P58182 307 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 STX4Q12846 297 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 AADACL4Q5VUY2 407 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 SHISA6Q6ZSJ9 500 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 ESPNLQ6ZVH7 1005 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.65■□□□□ 0.1
USP28-208ENST00000540438 ZNF321PQ8N8H1 164 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 C17orf47Q8NEP4 570 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 SLC25A46Q96AG3 418 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 SENP5Q96HI0 755 aaPredicted RBP15.65■□□□□ 0.1
USP28-208ENST00000540438 C11orf54Q9H0W9 315 aaPredicted RBP15.65■□□□□ 0.1
USP28-208ENST00000540438 CRNNQ9UBG3 495 aaPredicted RBP15.65■□□□□ 0.1
USP28-208ENST00000540438 UNC119BA6NIH7 251 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 DUXAA6NLW8 204 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 FAM25AB3EWG3 89 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 FAM25CB3EWG5 89 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 FAM25GB3EWG6 89 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 GABRPO00591 440 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 CYR61O00622 381 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 GPR75O95800 540 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 IL9P15248 144 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 CPEP16870 476 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 GSTM3P21266 225 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 AKT2P31751 481 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 IFNGR2P38484 337 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 EEF1A1P68104 462 aaKnown RBP15.65■□□□□ 0.1
USP28-208ENST00000540438 EIF2B5Q13144 721 aaKnown RBP15.65■□□□□ 0.1
USP28-208ENST00000540438 ADAM15Q13444 863 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 TRIM69Q86WT6 500 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 CA13Q8N1Q1 262 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 OR4C3Q8NH37 302 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 CD180Q99467 661 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 NDOR1Q9UHB4 597 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 SF3B6Q9Y3B4 125 aaKnown RBP15.65■□□□□ 0.1
USP28-208ENST00000540438 TMEM184BQ9Y519 407 aaPredicted RBP15.65■□□□□ 0.1
USP28-208ENST00000540438 IDSB3KWA1 339 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 KIR2DS3Q14952 304 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 MINDY4Q4G0A6 757 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 TP53I3Q53FA7 332 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 CNIH2Q6PI25 160 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 NCCRP1Q6ZVX7 275 aaPredicted RBP15.65■□□□□ 0.1
USP28-208ENST00000540438 DNAJC5GQ8N7S2 189 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 POGLUT1Q8NBL1 392 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 FAM174AQ8TBP5 190 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.65■□□□□ 0.1
USP28-208ENST00000540438 ZNRF4Q8WWF5 429 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 IL20Q9NYY1 176 aa15.65■□□□□ 0.1
USP28-208ENST00000540438 NUFIP1Q9UHK0 495 aaKnown RBP15.65■□□□□ 0.1
USP28-208ENST00000540438 A0A1B0GVT2 93 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 CSF3P09919 207 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 PRKAR1BP31321 381 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 DEFA1P59665 94 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 DEFA3P59666 94 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 CD83Q01151 205 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 RAB40BQ12829 278 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 PRICKLE4Q2TBC4 344 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 DEFB133Q30KQ1 61 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 ARHGAP11BQ3KRB8 267 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 SLC44A3Q8N4M1 653 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 SLC37A3Q8NCC5 494 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 IL17RDQ8NFM7 739 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 BAHD1Q8TBE0 780 aaPredicted RBP15.64■□□□□ 0.09
USP28-208ENST00000540438 SLC22A18Q96BI1 424 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 TM4SF19Q96DZ7 209 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 TGM7Q96PF1 710 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 TSSK2Q96PF2 358 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 FYTTD1Q96QD9 318 aaKnown RBP15.64■□□□□ 0.09
USP28-208ENST00000540438 ARHGAP9Q9BRR9 750 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 SOHLH2Q9NX45 425 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 PHF11Q9UIL8 331 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 ERVK-19Q9WJR5 959 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 DAPL1A0PJW8 107 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 SAGE2PA6NJ88 616 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 CBX7O95931 251 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 RACK1P63244 317 aaKnown RBP15.64■□□□□ 0.09
USP28-208ENST00000540438 BNC1Q01954 994 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 ODF4Q2M2E3 257 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 PLK5Q496M5 336 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 ARMC6Q6NXE6 501 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 VWA5B2Q8N398 1253 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 ZPLD1Q8TCW7 415 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 OSTF1Q92882 214 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 ANKRD9Q96BM1 317 aaPredicted RBP15.64■□□□□ 0.09
USP28-208ENST00000540438 MMABQ96EY8 250 aaPredicted RBP15.64■□□□□ 0.09
USP28-208ENST00000540438 RBM18Q96H35 190 aaKnown RBP15.64■□□□□ 0.09
USP28-208ENST00000540438 NKX3-1Q99801 234 aaPredicted RBP15.64■□□□□ 0.09
USP28-208ENST00000540438 MESP1Q9BRJ9 268 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 WACQ9BTA9 647 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 ALG8Q9BVK2 526 aa15.64■□□□□ 0.09
USP28-208ENST00000540438 PLSCR3Q9NRY6 295 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms