RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 SGCBQ16585 318 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 ATAD3BQ5T9A4 648 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 EEF1A1P5Q5VTE0 462 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 TYW3Q6IPR3 259 aaKnown RBP13.29□□□□□ -0.28
USP28-204ENST00000537642 VWA1Q6PCB0 445 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 RNF130Q86XS8 419 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 GPR119Q8TDV5 335 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 LRRC8CQ8TDW0 803 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 ROPN1LQ96C74 230 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 STARD4Q96DR4 205 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 RBM24Q9BX46 236 aaKnown RBP13.29□□□□□ -0.28
USP28-204ENST00000537642 TMEM185BQ9H7F4 350 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 VIPAS39Q9H9C1 493 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 RNF122Q9H9V4 155 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 SDR39U1Q9NRG7 319 aaPredicted RBP13.29□□□□□ -0.28
USP28-204ENST00000537642 ZIM2Q9NZV7 527 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 PACSIN3Q9UKS6 424 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 A0A0J9YW62 118 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 A8MXE2 369 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 HMGN4O00479 90 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 ADAMDEC1O15204 470 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 ZNF264O43296 627 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 EFNA2O43921 213 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 KIAA0513O60268 411 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 EIF4E2O60573 245 aaKnown RBP13.28□□□□□ -0.28
USP28-204ENST00000537642 AQP8O94778 261 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 IL6P05231 212 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 GUSBP08236 651 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 SHC1P29353 583 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 EIF1P41567 113 aaKnown RBP13.28□□□□□ -0.28
USP28-204ENST00000537642 KIR2DL2P43627 348 aaPredicted RBP13.28□□□□□ -0.28
USP28-204ENST00000537642 SLC6A8P48029 635 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 SORDQ00796 357 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 LRRC74AQ0VAA2 488 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 MAPK14Q16539 360 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 AP1ARQ63HQ0 302 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 FRRS1Q6ZNA5 592 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 ZNF621Q6ZSS3 439 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 BTLAQ7Z6A9 289 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 TMEM200AQ86VY9 491 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 KIF18BQ86Y91 864 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 TRIML2Q8N7C3 387 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 CNEP1R1Q8N9A8 125 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 OR9I1Q8NGQ6 314 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 OR10D3Q8NH80 312 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 OR2V1Q8NHB1 315 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 RFWD2Q8NHY2 731 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 FBXO27Q8NI29 283 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 ARSGQ96EG1 525 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 SAP130Q9H0E3 1048 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 POLE3Q9NRF9 147 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 SLC6A13Q9NSD5 602 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 ARGLU1Q9NWB6 273 aaPredicted RBP13.28□□□□□ -0.28
USP28-204ENST00000537642 GALNT8Q9NY28 637 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 WDR45Q9Y484 360 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 CCDC168Q8NDH2 2452 aa13.28□□□□□ -0.28
USP28-204ENST00000537642 AKAP6Q13023 2319 aa13.27□□□□□ -0.28
USP28-204ENST00000537642 HMGB1P1B2RPK0 211 aaPredicted RBP13.27□□□□□ -0.29
USP28-204ENST00000537642 TNFSF11O14788 317 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 MSTNO14793 375 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 CXCL13O43927 109 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 CTAG2O75638 210 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 NTN1O95631 604 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 PRKCAP17252 672 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 ME2P23368 584 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 ELK4P28324 431 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 ADH6P28332 368 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 CPA2P48052 419 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 SIRPAP78324 504 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 SKP2Q13309 424 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 GUSBP1Q15486 140 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 COX20Q5RI15 118 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 ESPNLQ6ZVH7 1005 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 LILRA2Q8N149 483 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 ZNF619Q8N2I2 560 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 TMCO5AQ8N6Q1 288 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 TOR1AIP2Q8NFQ8 470 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 OR5W2Q8NH69 310 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 LINC01560Q8TB33 94 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 PNPT1Q8TCS8 783 aaKnown RBP13.27□□□□□ -0.29
USP28-204ENST00000537642 FAM222BQ8WU58 562 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 ZG16BQ96DA0 208 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 LAT2Q9GZY6 243 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 PAQR5Q9NXK6 330 aaPredicted RBP13.27□□□□□ -0.29
USP28-204ENST00000537642 GPC6Q9Y625 555 aaPredicted RBP13.27□□□□□ -0.29
USP28-204ENST00000537642 ANKRD17O75179 2603 aaKnown RBP13.27□□□□□ -0.29
USP28-204ENST00000537642 ABCA4P78363 2273 aa13.27□□□□□ -0.29
USP28-204ENST00000537642 FAM221AA4D161 298 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 TUBAL3A6NHL2 446 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 ENO4A6NNW6 628 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 ETV2O00321 342 aaPredicted RBP13.26□□□□□ -0.29
USP28-204ENST00000537642 RFXANKO14593 260 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 DNAJA2O60884 412 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 BCAS1O75363 584 aaPredicted RBP13.26□□□□□ -0.29
USP28-204ENST00000537642 CYP7B1O75881 506 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 SMNDC1O75940 238 aaKnown RBP eCLIP13.26□□□□□ -0.29
USP28-204ENST00000537642 TGDSO95455 350 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 H6PDO95479 791 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 CSTAP01040 98 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 CGAP01215 116 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms