RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 STARP49675 285 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 RNF144AP50876 292 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-208ENST00000532560 ARFIP2P53365 341 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 DSTNP60981 165 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 SKP2Q13309 424 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 FGFBP1Q14512 234 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 CDSNQ15517 529 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 MAPK14Q16539 360 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 SYPL1Q16563 259 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 PAGE3Q5JUK9 113 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 CBLN3Q6UW01 205 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 ASRGL1Q7L266 308 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 MSRB3Q8IXL7 192 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 FITM2Q8N6M3 262 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 FAM71CQ8NEG0 241 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 CA5BP1Q8WTZ4 195 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 PMM1Q92871 262 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 UCN2Q96RP3 112 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 TUBA1CQ9BQE3 449 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 CALHM2Q9HA72 323 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 SLC25A37Q9NYZ2 338 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 SLC35A3Q9Y2D2 325 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 CARD8Q9Y2G2 431 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 AP4B1Q9Y6B7 739 aa13.59□□□□□ -0.23
CPSF1-208ENST00000532560 A0A0G2JNJ9 132 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 MBD3L4A6NDZ8 208 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-208ENST00000532560 MBD3L3A6NE82 208 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-208ENST00000532560 MBD3L5A6NJ08 208 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-208ENST00000532560 KDM4EB2RXH2 506 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-208ENST00000532560 CLIC1O00299 241 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 LINGO3P0C6S8 592 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 NR2F1P10589 423 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 BMP2P12643 396 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 RPS4Y1P22090 263 aaKnown RBP13.58□□□□□ -0.24
CPSF1-208ENST00000532560 PPIBP23284 216 aaKnown RBP13.58□□□□□ -0.24
CPSF1-208ENST00000532560 TIMP3P35625 211 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 CHRNEQ04844 493 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 SRYQ05066 204 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 RGNQ15493 299 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 MAPK11Q15759 364 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 NDUFAF6Q330K2 333 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 EIF3MQ7L2H7 374 aaKnown RBP13.58□□□□□ -0.24
CPSF1-208ENST00000532560 CCDC71Q8IV32 467 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-208ENST00000532560 DPP10Q8N608 796 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 OR5M1Q8NGP8 315 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 OR10Q1Q8NGQ4 319 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 OR5W2Q8NH69 310 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 MBD3L2Q8NHZ7 208 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-208ENST00000532560 ARSGQ96EG1 525 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 TRIB1Q96RU8 372 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 KLHDC3Q9BQ90 382 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 LAT2Q9GZY6 243 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 LRMDAQ9H2I8 198 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 RUBCNLQ9H714 662 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 CALML5Q9NZT1 146 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 VAPAQ9P0L0 249 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 SLAMF8Q9P0V8 285 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 CLCF1Q9UBD9 225 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 Q9UFV3 132 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 LEF1Q9UJU2 399 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-208ENST00000532560 ZNF337Q9Y3M9 751 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 DSPPQ9NZW4 1301 aa13.58□□□□□ -0.24
CPSF1-208ENST00000532560 AGAP5A6NIR3 686 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 CLCA1A8K7I4 914 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 HSPB2A8KAH6 182 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 SHISA8B8ZZ34 492 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 PRSS44E7EML9 344 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 H3BML4 177 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 ETV2O00321 342 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-208ENST00000532560 ANGPT2O15123 496 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 DNAJA2O60884 412 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 TOXO94900 526 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 ATP6V1G2O95670 118 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 NUDT14O95848 222 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 CSTAP01040 98 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 PSMA4P25789 261 aaKnown RBP13.57□□□□□ -0.24
CPSF1-208ENST00000532560 ELK4P28324 431 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 ADH6P28332 368 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 HTR1EP28566 365 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 CEACAM8P31997 349 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-208ENST00000532560 PGM1P36871 562 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 EIF1P41567 113 aaKnown RBP13.57□□□□□ -0.24
CPSF1-208ENST00000532560 CRISP3P54108 245 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 CBFBQ13951 182 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 GNA13Q14344 377 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 HSPB2Q16082 182 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 DLEU7Q6UYE1 221 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 CMIPQ8IY22 773 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 MEIOBQ8N635 442 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 TMCO5AQ8N6Q1 288 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 LILRB4Q8NHJ6 448 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 GPR119Q8TDV5 335 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 C10orf82Q8WW14 230 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 ZG16BQ96DA0 208 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 RNF145Q96MT1 663 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 ANKRD27Q96NW4 1050 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 QRSL1Q9H0R6 528 aaKnown RBP13.57□□□□□ -0.24
CPSF1-208ENST00000532560 CHST11Q9NPF2 352 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 STOML1Q9UBI4 398 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 CORO2BQ9UQ03 480 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms