RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 UGT2B17O75795 530 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 OR2J2O76002 312 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 NADKO95544 446 aaPredicted RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 LGI1O95970 557 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 ALPPP05187 535 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 GPIP06744 558 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 CHRM4P08173 479 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 PABPC4LP0CB38 370 aaKnown RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 NCK1P16333 377 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 IL7RP16871 459 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 WT1P19544 449 aaPredicted RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 PRKAR1BP31321 381 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 CLK3P49761 638 aaKnown RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 HLCSP50747 726 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 SSR4P51571 173 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 RPP38P78345 283 aaKnown RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 HPCAP84074 193 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 TEKQ02763 1124 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 FUT5Q11128 374 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 CDC20Q12834 499 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 SNTA1Q13424 505 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 GPR68Q15743 365 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 NTRK2Q16620 822 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 TBR1Q16650 682 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 DUSP7Q16829 419 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 LINC00303Q3SY05 128 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 FLYWCH1Q4VC44 716 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 CYBRD1Q53TN4 286 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 ZNF311Q5JNZ3 666 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 CCNJQ5T5M9 372 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 ABHD17BQ5VST6 288 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 AGAP7PQ5VUJ5 663 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 TMEM81Q6P7N7 255 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 AAGABQ6PD74 315 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 FRRS1Q6ZNA5 592 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 GRAMD2AQ8IUY3 354 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 CMIPQ8IY22 773 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 GALNT16Q8N428 558 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 ZNF527Q8NB42 609 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 PAPD5Q8NDF8 572 aaKnown RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 OR52P1PQ8NH57 321 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 THAP3Q8WTV1 239 aaPredicted RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 WDR60Q8WVS4 1066 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 APOBEC4Q8WW27 367 aaKnown RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 HAS2Q92819 552 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 EXTL1Q92935 676 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 SLC35B4Q969S0 331 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 OMA1Q96E52 524 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 OTUB1Q96FW1 271 aaPredicted RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 RMND5BQ96G75 393 aaPredicted RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 AGAP4Q96P64 663 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 RASL10BQ96S79 203 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 ADOQ96SZ5 270 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 PINK1Q9BXM7 581 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 LIN28AQ9H9Z2 209 aaKnown RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 ZBTB20Q9HC78 741 aaPredicted RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 SDHAF3Q9NRP4 125 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 CCM2LQ9NUG4 571 aaPredicted RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 CNIH4Q9P003 139 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 SEC14L3Q9UDX4 400 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 DTNAQ9Y4J8 743 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 PCSK5Q92824 1860 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 EML6Q6ZMW3 1958 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 ZNF462Q96JM2 2506 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 TCRBV5S2A0A599 114 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 ARGFXA6NJG6 315 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 B8ZZF3 427 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 ALG1L2C9J202 215 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 H3BNH8 94 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 SYT5O00445 386 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 SCDO00767 359 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 KIAA0513O60268 411 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 FADS1O60427 444 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 ZNF354AO60765 605 aaPredicted RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 CEACAM4O75871 244 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 DNAJB5O75953 348 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 PRKD3O94806 890 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 UTS2O95399 124 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 SERPINA1P01009 418 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 FESP07332 822 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 RNASE1P07998 156 aaKnown RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 CELA2AP08217 269 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 NAT2P11245 290 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 CYP4B1P13584 511 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 HPGDP15428 266 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 RPS4Y1P22090 263 aaKnown RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 ITGA3P26006 1051 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 IL12BP29460 328 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 SLC7A1P30825 629 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 CYB561P49447 251 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 CCL11P51671 97 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 CRYBA2P53672 197 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 KCNJ10P78508 379 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 ELF3P78545 371 aaPredicted RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 CHRNB3Q05901 458 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 DMTNQ08495 405 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 C17orf67Q0P5P2 114 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 PLCXD2Q0VAA5 305 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 RIPK1Q13546 671 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms