RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	PLAUR	Q03405	335 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	TOMM20	Q15388	145 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	ZNF836	Q6ZNA1	936 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	IFNE	Q86WN2	208 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	VRK2	Q86Y07	508 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	ARHGAP24	Q8N264	748 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	OR14L1P	Q8NHC6	308 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	GPR119	Q8TDV5	335 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	RASSF5	Q8WWW0	418 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	SLC6A15	Q9H2J7	730 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	LDAH	Q9H6V9	325 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	MED17	Q9NVC6	651 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	ZNF835	Q9Y2P0	537 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	GCM2	O75603	506 aa	Predicted RBP	18.82	■□□□□ 0.6
CD44-222	ENST00000526025	UBOX5	O94941	541 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	MFN2	O95140	757 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	ACTL6A	O96019	429 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	LINGO3	P0C6S8	592 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	HK1	P19367	917 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	PGC	P20142	388 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	EIF1	P41567	113 aa	Known RBP	18.82	■□□□□ 0.6
CD44-222	ENST00000526025	GSK3B	P49841	420 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	GFRA1	P56159	465 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	MXRA7	P84157	204 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	SLC25A3	Q00325	362 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	ELOA	Q14241	798 aa	Known RBP	18.82	■□□□□ 0.6
CD44-222	ENST00000526025	PLPPR5	Q32ZL2	321 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	AAGAB	Q6PD74	315 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025		Q6ZPB1	254 aa	Predicted RBP	18.82	■□□□□ 0.6
CD44-222	ENST00000526025	ARMC8	Q8IUR7	673 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	18.82	■□□□□ 0.6
CD44-222	ENST00000526025	TMCO5A	Q8N6Q1	288 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	RBM15B	Q8NDT2	890 aa	Known RBP	18.82	■□□□□ 0.6
CD44-222	ENST00000526025	FBXO27	Q8NI29	283 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	SARAF	Q96BY9	339 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	PIGQ	Q9BRB3	760 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	PINK1	Q9BXM7	581 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	PIF1	Q9H611	641 aa		18.82	■□□□□ 0.6
CD44-222	ENST00000526025	MED12	Q93074	2177 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025		A0A1B0GTH9	108 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	CLDN24	A6NM45	220 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	SYT5	O00445	386 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	BCKDK	O14874	412 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	IFNA14	P01570	189 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	HSD17B1	P14061	328 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	ADH6	P28332	368 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	AQP1	P29972	269 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	PTGS2	P35354	604 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	B3GALT5-AS1	P59052	145 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	FXN	Q16595	210 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	NDUFAF6	Q330K2	333 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	SLC25A53	Q5H9E4	307 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	WIPI1	Q5MNZ9	446 aa	Predicted RBP	18.81	■□□□□ 0.6
CD44-222	ENST00000526025	SAMD4B	Q5PRF9	694 aa	Known RBP	18.81	■□□□□ 0.6
CD44-222	ENST00000526025	VASN	Q6EMK4	673 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	C6orf89	Q6UWU4	347 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	ARSK	Q6UWY0	536 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	ZNF550	Q7Z398	422 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	FGD2	Q7Z6J4	655 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	HMGN2P46	Q86SG4	172 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	YRDC	Q86U90	279 aa	Known RBP	18.81	■□□□□ 0.6
CD44-222	ENST00000526025	SPPL2C	Q8IUH8	684 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	DEFB107A	Q8IZN7	70 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	ST8SIA1	Q92185	356 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	CNOT9	Q92600	299 aa	Known RBP	18.81	■□□□□ 0.6
CD44-222	ENST00000526025	ADA2	Q9NZK5	511 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	CHST2	Q9Y4C5	530 aa		18.81	■□□□□ 0.6
CD44-222	ENST00000526025	HIVEP3	Q5T1R4	2406 aa		18.8	■□□□□ 0.6
CD44-222	ENST00000526025		M0QX08	132 aa		18.8	■□□□□ 0.6
CD44-222	ENST00000526025	BCAS1	O75363	584 aa	Predicted RBP	18.8	■□□□□ 0.6
CD44-222	ENST00000526025	C8B	P07358	591 aa		18.8	■□□□□ 0.6
CD44-222	ENST00000526025	PLA2G2A	P14555	144 aa		18.8	■□□□□ 0.6
CD44-222	ENST00000526025	UQCRB	P14927	111 aa		18.8	■□□□□ 0.6
CD44-222	ENST00000526025	HTR1E	P28566	365 aa		18.8	■□□□□ 0.6
CD44-222	ENST00000526025	RNF144A	P50876	292 aa	Predicted RBP	18.8	■□□□□ 0.6
CD44-222	ENST00000526025	IGFBP7	Q16270	282 aa		18.8	■□□□□ 0.6
CD44-222	ENST00000526025	TMEM234	Q8WY98	164 aa		18.8	■□□□□ 0.6
CD44-222	ENST00000526025	MRGPRX4	Q96LA9	322 aa		18.8	■□□□□ 0.6
CD44-222	ENST00000526025	SFXN2	Q96NB2	322 aa		18.8	■□□□□ 0.6
CD44-222	ENST00000526025	KCTD14	Q9BQ13	255 aa	Predicted RBP	18.8	■□□□□ 0.6
CD44-222	ENST00000526025	EXO5	Q9H790	373 aa		18.8	■□□□□ 0.6
CD44-222	ENST00000526025	SPRR3	Q9UBC9	169 aa		18.8	■□□□□ 0.6
CD44-222	ENST00000526025	CD300A	Q9UGN4	299 aa		18.8	■□□□□ 0.6
CD44-222	ENST00000526025	USP22	Q9UPT9	525 aa		18.8	■□□□□ 0.6
CD44-222	ENST00000526025	MYO18B	Q8IUG5	2567 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	CFAP73	A6NFT4	308 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	SLC19A2	O60779	497 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	NTN1	O95631	604 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	NUDT14	O95848	222 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	ELK4	P28324	431 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	CCR4	P51679	360 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	HSF1	Q00613	529 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	CRYZ	Q08257	329 aa	Known RBP	18.79	■□□□□ 0.6
CD44-222	ENST00000526025	DMTN	Q08495	405 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	EPS8	Q12929	822 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	BCL2A1	Q16548	175 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	ENPP6	Q6UWR7	440 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	CLIP4	Q8N3C7	705 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	FAM57A	Q8TBR7	257 aa		18.79	■□□□□ 0.6

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