RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CD40LGP29965 261 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PPP2R1BP30154 601 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 OXTRP30559 389 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 LCN1P31025 176 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 HOXA9P31269 272 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDH5P33151 784 aaPredicted RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 DUTP33316 252 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CD80P33681 288 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPL4P36578 427 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PIGAP37287 484 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPL3P39023 403 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 FEN1P39748 380 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 VHLP40337 213 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 P2RY2P41231 377 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CSKP41240 450 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TNFSF9P41273 254 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMPOP42166 694 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAGEA2P43356 314 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 NKX2-1P43699 371 aaPredicted RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 HTR5AP47898 357 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 P2RY1P47900 373 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 NPBWR2P48146 333 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPL34P49207 117 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 POU3F4P49335 361 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRPL19P49406 292 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARRB1P49407 418 aaPredicted RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CASP4P49662 377 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PGFP49763 221 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 NUP153P49790 1475 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 STK19P49842 368 aaPredicted RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TAF6P49848 677 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 GDI2P50395 445 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 EMDP50402 254 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC26A2P50443 739 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 DUSP3P51452 185 aaPredicted RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 NOVA1P51513 510 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SGSHP51688 502 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCNHP51946 323 aaPredicted RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 HNRNPA3P51991 378 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAP1GDS1P52306 607 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 NDST2P52849 883 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CEBPGP53567 150 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ATP1B3P54709 279 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PSMD4P55036 377 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 UCNP55089 124 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLDN17P56750 224 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 NANOS2P60321 138 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ERVFC1-1P60608 527 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 MYL6P60660 151 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 DSTNP60981 165 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB10P61026 200 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ISL1P61371 349 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPS4XP62701 263 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SKP1P63208 163 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 KCNJ2P63252 427 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 IRX1P78414 480 aaPredicted RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CX3CL1P78423 397 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 NTHL1P78549 312 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 LCN2P80188 198 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PITPNAQ00169 270 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 MYL7Q01449 175 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 DR1Q01658 176 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 EWSR1Q01844 656 aaKnown RBP eCLIP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDR2Q01850 454 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SP3Q02447 781 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 IRF8Q02556 426 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CHRNB3Q05901 458 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 KLRC3Q07444 240 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 LGALS3BPQ08380 585 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PPIDQ08752 370 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF415Q09FC8 603 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 RIPPLY1Q0D2K3 151 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZP4Q12836 540 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CNTN1Q12860 1018 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 KLRB1Q12918 225 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TAF10Q12962 218 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 GAGE5Q13069 117 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 GAGE6Q13070 117 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CALCOCO2Q13137 446 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 STX5Q13190 355 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLAMF1Q13291 335 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 MFAP5Q13361 173 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 MED21Q13503 144 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 C1orf61Q13536 156 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 KLF5Q13887 457 aaPredicted RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 GTF2H2Q13888 395 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TFDP1Q14186 410 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CTTNQ14247 550 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 GRB7Q14451 532 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 HNF4GQ14541 408 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF234Q14588 700 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ITIH4Q14624 930 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CASP8Q14790 479 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC17A1Q14916 467 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIR2DS5Q14953 304 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 FRMPD4Q14CM0 1322 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ATXN7L3Q14CW9 347 aaPredicted RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 FASTKD3Q14CZ7 662 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 EFNB3Q15768 340 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF77Q15935 545 aa0.51□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms