RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 RCN3Q96D15 328 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 HOPXQ9BPY8 73 aaPredicted RBP12.93□□□□□ -0.34
NUP54-216ENST00000514901 ECSITQ9BQ95 431 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 SPATA5L1Q9BVQ7 753 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 EXOSC3Q9NQT5 275 aaKnown RBP12.93□□□□□ -0.34
NUP54-216ENST00000514901 MED17Q9NVC6 651 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 TINAGQ9UJW2 476 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 RPH3AQ9Y2J0 694 aaPredicted RBP12.93□□□□□ -0.34
NUP54-216ENST00000514901 MEMO1Q9Y316 297 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 HEATR5AQ86XA9 2040 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 TENM4Q6N022 2769 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 CENPVL1A0A0U1RR11 272 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 ZNHIT1O43257 154 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 GMFGO60234 142 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 DNAJA2O60884 412 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 NUDT14O95848 222 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 ACVR2AP27037 513 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 ADH6P28332 368 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 SLC6A8P48029 635 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 MTPNP58546 118 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 B3GALT5-AS1P59052 145 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 SKP2Q13309 424 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 SCARB2Q14108 478 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 ADRM1Q16186 407 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 TMEM44Q2T9K0 475 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 PLPPR5Q32ZL2 321 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 LIN52Q52LA3 116 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 EMC4Q5J8M3 183 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 ZNF585AQ6P3V2 769 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 CBLN3Q6UW01 205 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 ARSKQ6UWY0 536 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 HACD2Q6Y1H2 254 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 NET1Q7Z628 596 aaPredicted RBP12.92□□□□□ -0.34
NUP54-216ENST00000514901 FJX1Q86VR8 437 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 ZNF440Q8IYI8 595 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 GTPBP8Q8N3Z3 284 aaPredicted RBP12.92□□□□□ -0.34
NUP54-216ENST00000514901 TMCO5AQ8N6Q1 288 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 CCDC197Q8NCU1 140 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 HIPK4Q8NE63 616 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 FAM71CQ8NEG0 241 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 OR5M9Q8NGP3 310 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 NFKBIDQ8NI38 313 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 GPR119Q8TDV5 335 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 PHF10Q8WUB8 498 aaKnown RBP12.92□□□□□ -0.34
NUP54-216ENST00000514901 TMEM234Q8WY98 164 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 ZNF607Q96SK3 696 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 PRDM14Q9GZV8 571 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 QRSL1Q9H0R6 528 aaKnown RBP12.92□□□□□ -0.34
NUP54-216ENST00000514901 PNPLA3Q9NST1 481 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 ERRFI1Q9UJM3 462 aaPredicted RBP12.92□□□□□ -0.34
NUP54-216ENST00000514901 ANGPT4Q9Y264 503 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 GPC6Q9Y625 555 aaPredicted RBP12.92□□□□□ -0.34
NUP54-216ENST00000514901 AP4B1Q9Y6B7 739 aa12.92□□□□□ -0.34
NUP54-216ENST00000514901 OR2M5A3KFT3 312 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 FXYD1O00168 92 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 NDUFAB1O14561 156 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 AIM2O14862 343 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 OIP5O43482 229 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 SEMA7AO75326 666 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 SERPINB7O75635 380 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 CYP7B1O75881 506 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 LINGO3P0C6S8 592 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 UBTFL6P0CB48 400 aaPredicted RBP12.91□□□□□ -0.34
NUP54-216ENST00000514901 PGCP20142 388 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 LHX2P50458 406 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 EEFSECP57772 596 aaKnown RBP12.91□□□□□ -0.34
NUP54-216ENST00000514901 SELPLGQ14242 412 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 RNF220Q5VTB9 566 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 FAM91A1Q658Y4 838 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 GRAMD2AQ8IUY3 354 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 ULK2Q8IYT8 1036 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 C10orf111Q8N326 155 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 BHLHE22Q8NFJ8 381 aaPredicted RBP12.91□□□□□ -0.34
NUP54-216ENST00000514901 OR10A6Q8NH74 314 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 ZPLD1Q8TCW7 415 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 ST8SIA1Q92185 356 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 WDYHV1Q96HA8 205 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 MRGPRX4Q96LA9 322 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 SLC39A3Q9BRY0 314 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 ALKBH4Q9NXW9 302 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 TNFRSF10DQ9UBN6 386 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 SH3BGRL2Q9UJC5 107 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 CAMK2AQ9UQM7 478 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 VDAC3Q9Y277 283 aa12.91□□□□□ -0.34
NUP54-216ENST00000514901 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 CDHR4A6H8M9 788 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 PRORSD1PA6NEY8 169 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 WIPF3A6NGB9 483 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 ETV2O00321 342 aaPredicted RBP12.9□□□□□ -0.34
NUP54-216ENST00000514901 PABPC4LP0CB38 370 aaKnown RBP12.9□□□□□ -0.34
NUP54-216ENST00000514901 UQCRBP14927 111 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 ZNF708P17019 499 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 POU3F2P20265 443 aaPredicted RBP12.9□□□□□ -0.34
NUP54-216ENST00000514901 TCEA1P23193 301 aaKnown RBP12.9□□□□□ -0.34
NUP54-216ENST00000514901 RNF144AP50876 292 aaPredicted RBP12.9□□□□□ -0.34
NUP54-216ENST00000514901 GZMMP51124 257 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 CCR4P51679 360 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 SMSP52788 366 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 SRSF1Q07955 248 aaKnown RBP eCLIP12.9□□□□□ -0.347e-7■□□□□ 8.2
NUP54-216ENST00000514901 NDUFAF6Q330K2 333 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms