RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 PAQR9Q6ZVX9 377 aa12.34□□□□□ -0.43
PTPRF-215ENST00000496447 WDR53Q7Z5U6 358 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-215ENST00000496447 TMEM151AQ8N4L1 468 aa12.34□□□□□ -0.43
PTPRF-215ENST00000496447 OR9Q2Q8NGE9 314 aa12.34□□□□□ -0.43
PTPRF-215ENST00000496447 OR6C1Q96RD1 312 aa12.34□□□□□ -0.43
PTPRF-215ENST00000496447 LMF2Q9BU23 707 aaKnown RBP12.34□□□□□ -0.43
PTPRF-215ENST00000496447 BTBD2Q9BX70 525 aa12.34□□□□□ -0.43
PTPRF-215ENST00000496447 PLSCR5A0PG75 271 aa12.34□□□□□ -0.43
PTPRF-215ENST00000496447 ANKRD34BA5PLL1 514 aa12.34□□□□□ -0.43
PTPRF-215ENST00000496447 GABRR3A8MPY1 467 aa12.34□□□□□ -0.43
PTPRF-215ENST00000496447 B3GALNT1O75752 331 aa12.34□□□□□ -0.43
PTPRF-215ENST00000496447 ZMYND19Q96E35 227 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-215ENST00000496447 INIPQ9NRY2 104 aa12.34□□□□□ -0.43
PTPRF-215ENST00000496447 PRKYO43930 277 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 TFAP2AP05549 437 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 PRDX3P30048 256 aaKnown RBP12.33□□□□□ -0.44
PTPRF-215ENST00000496447 PKLRP30613 574 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 AKR1C2P52895 323 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 NCS1P62166 190 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 PAGE3Q5JUK9 113 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 GPR149Q86SP6 731 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 OR14A16Q8NHC5 309 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 TMEM181Q9P2C4 612 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 AGAP5A6NIR3 686 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 H3BNC9 293 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 PAHP00439 452 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 RAB3BP20337 219 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 OR5M10Q6IEU7 315 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 CPOQ8IVL8 374 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 MYADMQ96S97 322 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 HCAR1Q9BXC0 346 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 HDAC8Q9BY41 377 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 ARNT2Q9HBZ2 717 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 TMEM45AQ9NWC5 275 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 UBR2Q8IWV8 1755 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 PIGBOS1A0A0B4J2F0 54 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 C17orf113A0A1B0GUU1 675 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 RRP8O43159 456 aaKnown RBP12.33□□□□□ -0.44
PTPRF-215ENST00000496447 MITFO75030 526 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-215ENST00000496447 RETP07949 1114 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 H2AFB2P0C5Z0 115 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 MAT1AQ00266 395 aaKnown RBP12.33□□□□□ -0.44
PTPRF-215ENST00000496447 CPZQ66K79 652 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 ZNF704Q6ZNC4 412 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-215ENST00000496447 SNX18Q96RF0 628 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 RAB9BQ9NP90 201 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 THAP10Q9P2Z0 257 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-215ENST00000496447 SSX5O60225 188 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 CACNG3O60359 315 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 CASP3P42574 277 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 VEZF1Q14119 521 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 FGFBP1Q14512 234 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 ZNF595Q8IYB9 648 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 OR51T1Q8NGJ9 327 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 LMF1Q96S06 567 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 UTP23Q9BRU9 249 aaKnown RBP12.33□□□□□ -0.44
PTPRF-215ENST00000496447 TWSG1Q9GZX9 223 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 DYNLRB1Q9NP97 96 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 UBQLN4Q9NRR5 601 aa12.33□□□□□ -0.44
PTPRF-215ENST00000496447 NARSO43776 548 aaKnown RBP12.32□□□□□ -0.44
PTPRF-215ENST00000496447 GM2AP17900 193 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 RGS19P49795 217 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 DCDP81605 110 aaKnown RBP12.32□□□□□ -0.44
PTPRF-215ENST00000496447 CHRNEQ04844 493 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 FAPQ12884 760 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 SELPLGQ14242 412 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 TMEM205Q6UW68 189 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 SDR9C7Q8NEX9 313 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 OR6Q1Q8NGQ2 317 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 SLC22A12Q96S37 553 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 ARL6Q9H0F7 186 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-215ENST00000496447 ATXN1LP0C7T5 689 aaKnown RBP12.32□□□□□ -0.44
PTPRF-215ENST00000496447 ITGB8P26012 769 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 MZT1Q08AG7 82 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 RNASE10Q5GAN6 216 aaKnown RBP12.32□□□□□ -0.44
PTPRF-215ENST00000496447 PRSS48Q7RTY5 328 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 TSPYL5Q86VY4 417 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-215ENST00000496447 DEFB123Q8N688 67 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 ZFP90Q8TF47 636 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 RRNAD1Q96FB5 475 aaKnown RBP12.32□□□□□ -0.44
PTPRF-215ENST00000496447 OR10A5Q9H207 317 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 OR10A2Q9H208 303 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 OBP2AQ9NY56 170 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 LOC102725191A0A1B0GVB3 256 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 SGCEO43556 437 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 GMDSO60547 372 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 AGTR1P30556 359 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 TRIM23P36406 574 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 RAB38P57729 211 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 CCNJQ5T5M9 372 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 GRAMD2AQ8IUY3 354 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 OR5H2Q8NGV7 314 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 GTF2H4Q92759 462 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 OR7D2Q96RA2 312 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 PAPOLGQ9BWT3 736 aaKnown RBP12.32□□□□□ -0.44
PTPRF-215ENST00000496447 KLHL13Q9P2N7 655 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 GPR160Q9UJ42 338 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 SLC6A14Q9UN76 642 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 POLHQ9Y253 713 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms