RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 GNPDA2Q8TDQ7 276 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 HMGB4Q8WW32 186 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 MSLNLQ96KJ4 702 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 WDR92Q96MX6 357 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 GABRG3Q99928 467 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 HCAR1Q9BXC0 346 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 RNF32Q9H0A6 362 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 FBXL4Q9UKA2 621 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 E9PI62 339 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 TNFRSF10AO00220 468 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 PRKAR1AP10644 381 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 ARSBP15848 533 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 NDUFV2P19404 249 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 ST3GAL3Q11203 375 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 FIGLAQ6QHK4 219 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 QSOX2Q6ZRP7 698 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 FAM3CQ92520 227 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 GAS2L1Q99501 681 aaPredicted RBP15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 SARGQ9BW04 601 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 HEBP2Q9Y5Z4 205 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 INMT-MINDY4F8WBC2 141 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 PRODHO43272 600 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 CD3GP09693 182 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 TFPIP10646 304 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 TSPAN31Q12999 210 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 MRPL28Q13084 256 aaKnown RBP15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 FCN2Q15485 313 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 ZNF614Q8N883 585 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 PIGXQ8TBF5 258 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 SCARF2Q96GP6 870 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 DPH1Q9BZG8 443 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 ATP13A2Q9NQ11 1180 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 LYARQ9NX58 379 aaKnown RBP15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 NPAP1Q9NZP6 1156 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 CLEC1BQ9P126 229 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 FABP7O15540 132 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 ARHGEF9O43307 516 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 FGF17O60258 216 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 SERPINI2O75830 405 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 SHC2P98077 582 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 NDUFA9Q16795 377 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 ALG11Q2TAA5 492 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 TMEM99Q8N816 258 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 GDPD1Q8N9F7 314 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 PFN4Q8NHR9 129 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 MOAP1Q96BY2 351 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 MS4A4EQ96PG1 132 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 ACOXLQ9NUZ1 547 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 KLHL28Q9NXS3 571 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 ACTR10Q9NZ32 417 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 DAPP1Q9UN19 280 aa15.34■□□□□ 0.05
CCDC88B-210ENST00000494566 NT5EP21589 574 aa15.33■□□□□ 0.05
CCDC88B-210ENST00000494566 CEBPEQ15744 281 aa15.33■□□□□ 0.05
CCDC88B-210ENST00000494566 WDR88Q6ZMY6 472 aa15.33■□□□□ 0.05
CCDC88B-210ENST00000494566 RPLP0P6Q8NHW5 317 aa15.33■□□□□ 0.05
CCDC88B-210ENST00000494566 CCDC120Q96HB5 630 aa15.33■□□□□ 0.05
CCDC88B-210ENST00000494566 MS4A3Q96HJ5 214 aa15.33■□□□□ 0.05
CCDC88B-210ENST00000494566 WDFY2Q96P53 400 aa15.33■□□□□ 0.05
CCDC88B-210ENST00000494566 HINT3Q9NQE9 182 aaKnown RBP15.33■□□□□ 0.05
CCDC88B-210ENST00000494566 NUDT15Q9NV35 164 aa15.33■□□□□ 0.05
CCDC88B-210ENST00000494566 H2AFY2Q9P0M6 372 aaPredicted RBP15.33■□□□□ 0.05
CCDC88B-210ENST00000494566 KCNE5Q9UJ90 142 aa15.33■□□□□ 0.05
CCDC88B-210ENST00000494566 OR2W5A6NFC9 320 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 H0YGG7 62 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 ICMTO60725 284 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 EIF4EP06730 217 aaKnown RBP15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 TYRP1P17643 537 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 ENDOUP21128 410 aaKnown RBP15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 GSTM3P21266 225 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 ARF3P61204 181 aaPredicted RBP15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 C1orf61Q13536 156 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 KLHL22Q53GT1 634 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 SLC38A2Q96QD8 506 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 GDF15Q99988 308 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 ORAI3Q9BRQ5 295 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 SLC28A3Q9HAS3 691 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 C20orf141Q9NUB4 165 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 PSMD9O00233 223 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 B3GALT2O43825 422 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 CT62P0C5K7 136 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 DRD5P21918 477 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 TPMTP51580 245 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 ZNF155Q12901 538 aaPredicted RBP15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 SUZ12Q15022 739 aaKnown RBP15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 ZSWIM7Q19AV6 140 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 CDC73Q6P1J9 531 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 GDPGP1Q6ZNW5 385 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 ZAR1Q86SH2 424 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 CLDN22Q8N7P3 220 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 SDF2Q99470 211 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 ABCG5Q9H222 651 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 PPP1R3EQ9H7J1 279 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 RBFOX1Q9NWB1 397 aaKnown RBP15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 LIPT1Q9Y234 373 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 NCKAP1Q9Y2A7 1128 aa15.33■□□□□ 0.04
CCDC88B-210ENST00000494566 TEX46H3BTG2 121 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 SYT5O00445 386 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 CPMP14384 443 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 CCR6P51684 374 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 RASSF6Q6ZTQ3 369 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms