RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, human

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTN4-215	ENST00000491592	VPS35	Q96QK1	796 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	MYADM	Q96S97	322 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	CPNE1	Q99829	537 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	PELO	Q9BRX2	385 aa	Known RBP	4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	LXN	Q9BS40	222 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	PRRG3	Q9BZD7	231 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	POLR3F	Q9H1D9	316 aa	Predicted RBP	4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	PARVB	Q9HBI1	364 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	SLC38A10	Q9HBR0	1119 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	CD209	Q9NNX6	404 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	MRPS30	Q9NP92	439 aa	Known RBP	4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	CCNB1IP1	Q9NPC3	277 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	ACP6	Q9NPH0	428 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	ELOVL2	Q9NXB9	296 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	DPP3	Q9NY33	737 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	AHSP	Q9NZD4	102 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	COPS7A	Q9UBW8	275 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	RASD1	Q9Y272	281 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	COL4A1	P02462	1669 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	SBF2	Q86WG5	1849 aa		4.37	□□□□□ -1.71
RTN4-215	ENST00000491592	ABCA3	Q99758	1704 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	TCRBV7S3A2	A0A539	114 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592		A8MU76	341 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ZNF487	B1APH4	448 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	HAS3	O00219	553 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	PSMD12	O00232	456 aa	Predicted RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ZNF195	O14628	629 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	SCAMP2	O15127	329 aa	Known RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	PFDN6	O15212	129 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	PLIN3	O60664	434 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	NDUFS6	O75380	124 aa	Known RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	BANF1	O75531	89 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	SULT1C4	O75897	302 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	NEURL1	O76050	574 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ASS1	P00966	412 aa	Known RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	IFNA14	P01570	189 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	CRYGB	P07316	175 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ERCC1	P07992	297 aa	Predicted RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ANXA5	P08758	320 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	FCGR1A	P12314	374 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ZNF26	P17031	533 aa	Predicted RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	NAGA	P17050	411 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	TPSB2	P20231	275 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	DCK	P27707	260 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	IL12B	P29460	328 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	CHRNA5	P30532	468 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	OXTR	P30559	389 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	PRDX2	P32119	198 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	FEN1	P39748	380 aa	Known RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	CDKN2C	P42773	168 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	QARS	P47897	775 aa	Known RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	CDC34	P49427	236 aa	Predicted RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	NDST1	P52848	882 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	P2RX3	P56373	397 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	SEC61G	P60059	68 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ATP6V0D1	P61421	351 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	DLK1	P80370	383 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	BDH1	Q02338	343 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	FOXM1	Q08050	763 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	HYAL1	Q12794	435 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	GK2	Q14410	553 aa	Predicted RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	CYTH1	Q15438	398 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	TPSAB1	Q15661	275 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	CA9	Q16790	459 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ITPRIPL2	Q3MIP1	535 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	CDON	Q4KMG0	1287 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	MIDN	Q504T8	468 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	DCAF6	Q58WW2	860 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	XKR4	Q5GH76	650 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	TCHHL1	Q5QJ38	904 aa	Predicted RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	C6orf52	Q5T4I8	152 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	MFSD14C	Q5VZR4	134 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	STEAP4	Q687X5	459 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ZNF470	Q6ECI4	717 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ASPHD2	Q6ICH7	369 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	RNASEK	Q6P5S7	137 aa	Known RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	CD164L2	Q6UWJ8	174 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	PLEKHG7	Q6ZR37	379 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	CDHR3	Q6ZTQ4	885 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	TMEM179	Q6ZVK1	233 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	PAGE2	Q7Z2X7	111 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	FAM122B	Q7Z309	247 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	TBC1D26	Q86UD7	250 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	CBWD2	Q8IUF1	395 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	CLVS1	Q8IUQ0	354 aa	Predicted RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	LAX1	Q8IWV1	398 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	SELENOH	Q8IZQ5	122 aa	Known RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	CENPS	Q8N2Z9	138 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	PCDH20	Q8N6Y1	951 aa	Known RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	LRRC17	Q8N6Y2	441 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	PQLC3	Q8N755	202 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	TMEM217	Q8N7C4	229 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	SIDT2	Q8NBJ9	832 aa	Known RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	TMEM104	Q8NE00	496 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	S100Z	Q8WXG8	99 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ARNTL2	Q8WYA1	636 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ELMO1	Q92556	727 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	CCDC127	Q96BQ5	260 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	MOB3A	Q96BX8	217 aa		4.36	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms