RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ADNPQ9H2P0 1102 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 WDR70Q9NW82 654 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 DNAJB12Q9NXW2 375 aaKnown RBP13.05□□□□□ -0.32
CUX1-209ENST00000487284 BLOC1S6Q9UL45 172 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 MSRB2Q9Y3D2 182 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 FRYQ5TBA9 3013 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 LOC102723996A0A087X1L8 192 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 TO15178 435 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 LYPD3O95274 346 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 ANGPTL1O95841 491 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 LINGO3P0C6S8 592 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 GKN3PP0CG01 181 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 LCN1P31025 176 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 OTX2P32243 289 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 IFNGR2P38484 337 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 ALDH3B2P48448 385 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 RNF144AP50876 292 aaPredicted RBP13.04□□□□□ -0.32
CUX1-209ENST00000487284 LSM11P83369 360 aaKnown RBP eCLIP13.04□□□□□ -0.32
CUX1-209ENST00000487284 ALDH6A1Q02252 535 aaKnown RBP13.04□□□□□ -0.32
CUX1-209ENST00000487284 IL10RAQ13651 578 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 PTGES3Q15185 160 aaKnown RBP13.04□□□□□ -0.32
CUX1-209ENST00000487284 FOXB2Q5VYV0 432 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 PPP1R32Q7Z5V6 425 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 NKAIN4Q8IVV8 208 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 ENTHD1Q8IYW4 607 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 DEPDC4Q8N2C3 294 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 ZNF614Q8N883 585 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 ZNF441Q8N8Z8 693 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 C17orf47Q8NEP4 570 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 NFAM1Q8NET5 270 aaPredicted RBP13.04□□□□□ -0.32
CUX1-209ENST00000487284 OR4C3Q8NH37 302 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 LMF1Q96S06 567 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 PRSS27Q9BQR3 290 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 FAM117AQ9C073 453 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 SEMA4CQ9C0C4 833 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 WWTR1Q9GZV5 400 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 HOXD1Q9GZZ0 328 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 GPN2Q9H9Y4 310 aaPredicted RBP13.04□□□□□ -0.32
CUX1-209ENST00000487284 MRTO4Q9UKD2 239 aaKnown RBP13.04□□□□□ -0.32
CUX1-209ENST00000487284 PPIEQ9UNP9 301 aaKnown RBP13.04□□□□□ -0.32
CUX1-209ENST00000487284 RNF6Q9Y252 685 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 PCSK5Q92824 1860 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 NCOR2Q9Y618 2525 aa13.04□□□□□ -0.32
CUX1-209ENST00000487284 SERINC4A6NH21 518 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 SAGE2PA6NJ88 616 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 SOCS6O14544 535 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 WBP4O75554 376 aaKnown RBP13.03□□□□□ -0.32
CUX1-209ENST00000487284 IGHEP01854 428 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 COX6A1P12074 109 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 GSTM3P21266 225 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 ACAA2P42765 397 aaKnown RBP13.03□□□□□ -0.32
CUX1-209ENST00000487284 GSSP48637 474 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 TEKQ02763 1124 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 PCOLCEQ15113 449 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 OR1Q1Q15612 314 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 NADK2Q4G0N4 442 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 KLHL26Q53HC5 615 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 ZNF613Q6PF04 617 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 ZNF773Q6PK81 442 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 KIRREL2Q6UWL6 708 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 ZNF730Q6ZMV8 503 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 MBOAT2Q6ZWT7 520 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 SLC29A4Q7RTT9 530 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 VASH2Q86V25 355 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 SATL1Q86VE3 508 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 B3GNT7Q8NFL0 401 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 PIGXQ8TBF5 258 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 FAM81AQ8TBF8 368 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 GNPDA2Q8TDQ7 276 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 APH1BQ8WW43 257 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 EFHD2Q96C19 240 aaPredicted RBP13.03□□□□□ -0.32
CUX1-209ENST00000487284 GAL3ST4Q96RP7 486 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 LPAR4Q99677 370 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 UBQLN4Q9NRR5 601 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 SLC7A7Q9UM01 511 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 MPDZO75970 2070 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 SMIM31A0A1B0GVY4 71 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 PRKNO60260 465 aaPredicted RBP13.03□□□□□ -0.32
CUX1-209ENST00000487284 LIFP15018 202 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 GABRB1P18505 474 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 ADH7P40394 386 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 OMPP47874 163 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 PSPHP78330 225 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 TSPAN31Q12999 210 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 SRSF6Q13247 344 aaKnown RBP13.03□□□□□ -0.32
CUX1-209ENST00000487284 SSPNQ14714 243 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 FNDC7Q5VTL7 733 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 SLX4IPQ5VYV7 408 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 HLA-DQA1Q5Y7H0 255 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 ZNF550Q7Z398 422 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 FAM71CQ8NEG0 241 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 OR11G2Q8NGC1 345 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 RHOXF1Q8NHV9 184 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 UBE2FQ969M7 185 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 KIAA1143Q96AT1 154 aaPredicted RBP13.03□□□□□ -0.32
CUX1-209ENST00000487284 HSPBAP1Q96EW2 488 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 GPA33Q99795 319 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 TRIM2Q9C040 744 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 NDUFA13Q9P0J0 144 aa13.03□□□□□ -0.32
CUX1-209ENST00000487284 SLC35A3Q9Y2D2 325 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms