RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 CLDN24A6NM45 220 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 CLCA1A8K7I4 914 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 LINC01387J3KSC0 135 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 EIF4E2O60573 245 aaKnown RBP13.32□□□□□ -0.28
USP4-212ENST00000486549 BCAS1O75363 584 aaPredicted RBP13.32□□□□□ -0.28
USP4-212ENST00000486549 OPN1LWP04000 364 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 PPIBP23284 216 aaKnown RBP13.32□□□□□ -0.28
USP4-212ENST00000486549 HTR1EP28566 365 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 CHRNB4P30926 498 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 SUCLG1P53597 346 aaKnown RBP13.32□□□□□ -0.28
USP4-212ENST00000486549 SEC24CP53992 1094 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 CRISP3P54108 245 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 SUMO3P55854 103 aaPredicted RBP13.32□□□□□ -0.28
USP4-212ENST00000486549 CLDN20P56880 219 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 KLF10Q13118 480 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 FADDQ13158 208 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 CBFBQ13951 182 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 NFYCQ13952 458 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 TOMM34Q15785 309 aaPredicted RBP13.32□□□□□ -0.28
USP4-212ENST00000486549 TMEM44Q2T9K0 475 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 RIPPLY2Q5TAB7 128 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 NSUN5P2Q63ZY6 315 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 CHMP1BQ7LBR1 199 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 RETREG3Q86VR2 466 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 GTPBP8Q8N3Z3 284 aaPredicted RBP13.32□□□□□ -0.28
USP4-212ENST00000486549 TNIP2Q8NFZ5 429 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 OR5W2Q8NH69 310 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 POC1BQ8TC44 478 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 ZPLD1Q8TCW7 415 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 GPR119Q8TDV5 335 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 SLC38A5Q8WUX1 472 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 WDR60Q8WVS4 1066 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 MAL2Q969L2 176 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 MARVELD3Q96A59 401 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 TMEM19Q96HH6 336 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 DOCK7Q96N67 2140 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 TRIM8Q9BZR9 551 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 LAT2Q9GZY6 243 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 IKZF5Q9H5V7 419 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 TMEM185BQ9H7F4 350 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 SAR1AQ9NR31 198 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.32□□□□□ -0.28
USP4-212ENST00000486549 THUMPD1Q9NXG2 353 aaKnown RBP13.32□□□□□ -0.28
USP4-212ENST00000486549 CALML5Q9NZT1 146 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 SLC35A3Q9Y2D2 325 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 NKX2-6A6NCS4 301 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 AGAP5A6NIR3 686 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 EVPLLA8MZ36 301 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 C5orf58C9J3I9 102 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 TOXO94900 526 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 TFPTP0C1Z6 253 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 LINGO3P0C6S8 592 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 IL7RP16871 459 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 GRNP28799 593 aaKnown RBP13.31□□□□□ -0.28
USP4-212ENST00000486549 PGM1P36871 562 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 KCNJ10P78508 379 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 QPRTQ15274 297 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 BCL2A1Q16548 175 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 GCNT6Q5T4J0 391 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 PPP4R4Q6NUP7 873 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 DLEU7Q6UYE1 221 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 GRAMD2AQ8IUY3 354 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 PEX5LQ8IYB4 626 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 C10orf111Q8N326 155 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 DPP10Q8N608 796 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 NAXEQ8NCW5 288 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 FBXO27Q8NI29 283 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 OIT3Q8WWZ8 545 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 ELAC2Q9BQ52 826 aaKnown RBP13.31□□□□□ -0.28
USP4-212ENST00000486549 CPPED1Q9BRF8 314 aaPredicted RBP13.31□□□□□ -0.28
USP4-212ENST00000486549 UCK2Q9BZX2 261 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 MTHFD2LQ9H903 347 aaPredicted RBP13.31□□□□□ -0.28
USP4-212ENST00000486549 AP4B1Q9Y6B7 739 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 CAPN7Q9Y6W3 813 aa13.31□□□□□ -0.28
USP4-212ENST00000486549 C7orf72A4D263 438 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 CD8B2A6NJW9 211 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 FBP2O00757 339 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 EIF1AYO14602 144 aaKnown RBP13.3□□□□□ -0.28
USP4-212ENST00000486549 IL2RAP01589 272 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 DBIP07108 87 aaKnown RBP13.3□□□□□ -0.28
USP4-212ENST00000486549 PRKCAP17252 672 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 IL11P20809 199 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 ME2P23368 584 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 LSP1P33241 339 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 RYKP34925 604 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 EIF1P41567 113 aaKnown RBP13.3□□□□□ -0.28
USP4-212ENST00000486549 CLDN15P56746 228 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 EEFSECP57772 596 aaKnown RBP13.3□□□□□ -0.28
USP4-212ENST00000486549 GNGT1P63211 74 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 GNA13Q14344 377 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 CAPRIN1Q14444 709 aaKnown RBP13.3□□□□□ -0.28
USP4-212ENST00000486549 MMEL1Q495T6 779 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 RUNDC3AQ59EK9 446 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 ZNF836Q6ZNA1 936 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 P4HA3Q7Z4N8 544 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 SPATA21Q7Z572 469 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 SNX32Q86XE0 403 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 VRK2Q86Y07 508 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 C9orf106Q8NAJ2 232 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 FAM71CQ8NEG0 241 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms