RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 ZNF350Q9GZX5 532 aa6.3□□□□□ -1.4
VPS50-218ENST00000485994 LAT2Q9GZY6 243 aa6.3□□□□□ -1.4
VPS50-218ENST00000485994 VIPAS39Q9H9C1 493 aa6.3□□□□□ -1.4
VPS50-218ENST00000485994 GP6Q9HCN6 339 aa6.3□□□□□ -1.4
VPS50-218ENST00000485994 RASSF1Q9NS23 344 aa6.3□□□□□ -1.4
VPS50-218ENST00000485994 MED17Q9NVC6 651 aa6.3□□□□□ -1.4
VPS50-218ENST00000485994 AIG1Q9NVV5 245 aa6.3□□□□□ -1.4
VPS50-218ENST00000485994 TMEM45AQ9NWC5 275 aa6.3□□□□□ -1.4
VPS50-218ENST00000485994 ELOVL5Q9NYP7 299 aa6.3□□□□□ -1.4
VPS50-218ENST00000485994 EDARQ9UNE0 448 aa6.3□□□□□ -1.4
VPS50-218ENST00000485994 GPC6Q9Y625 555 aaPredicted RBP6.3□□□□□ -1.4
VPS50-218ENST00000485994 HIVEP1P15822 2718 aa6.3□□□□□ -1.4
VPS50-218ENST00000485994 TEP1Q99973 2627 aaKnown RBP6.29□□□□□ -1.4
VPS50-218ENST00000485994 ITPR3Q14573 2671 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 SERINC4A6NH21 518 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 SLC22A20A6NK97 555 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 C17orf51A8MQB3 221 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 E9PBE3 544 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 GTPBP1O00178 669 aaKnown RBP6.29□□□□□ -1.4
VPS50-218ENST00000485994 ZNF264O43296 627 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 EFNA2O43921 213 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 UGT2B17O75795 530 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 NTN1O95631 604 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 PGRP06401 933 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 PABPC4LP0CB38 370 aaKnown RBP6.29□□□□□ -1.4
VPS50-218ENST00000485994 FCGR2AP12318 317 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 EPHA3P29320 983 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 IL12AP29459 219 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 S100A3P33764 101 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 RFX3P48380 749 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 ZNF41P51814 821 aaPredicted RBP6.29□□□□□ -1.4
VPS50-218ENST00000485994 CLDN20P56880 219 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 KRTAP10-9P60411 292 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 UFM1P61960 85 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 ZNF117Q03924 483 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 CD226Q15762 336 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 CTU2Q2VPK5 515 aaKnown RBP6.29□□□□□ -1.4
VPS50-218ENST00000485994 PDCD4Q53EL6 469 aaKnown RBP6.29□□□□□ -1.4
VPS50-218ENST00000485994 SPANXN4Q5MJ08 99 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS50-218ENST00000485994 CCNJQ5T5M9 372 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 EPGNQ6UW88 154 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 SPNS3Q6ZMD2 512 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 MSANTD1Q6ZTZ1 278 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 FAM214BQ7L5A3 538 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 SZRD1Q7Z422 152 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 GGNQ86UU5 652 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 KRTAP1-3Q8IUG1 177 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 CLECL1Q8IZS7 167 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 TRIML2Q8N7C3 387 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 ANKRD42Q8N9B4 389 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 OR4A15Q8NGL6 344 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 OR5W2Q8NH69 310 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 RNF217Q8TC41 542 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 POC1BQ8TC44 478 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 PHOSPHO1Q8TCT1 267 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 STON2Q8WXE9 905 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 FIG4Q92562 907 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 JADE3Q92613 823 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 NINJ1Q92982 152 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 ARL8AQ96BM9 186 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 MRGPRX4Q96LA9 322 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 TEX37Q96LM6 180 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 C7orf26Q96N11 449 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 TRNT1Q96Q11 434 aaKnown RBP6.29□□□□□ -1.4
VPS50-218ENST00000485994 RBM24Q9BX46 236 aaKnown RBP6.29□□□□□ -1.4
VPS50-218ENST00000485994 PINK1Q9BXM7 581 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 OR10A4Q9H209 315 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 SERHL2Q9H4I8 314 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 MTHFD2LQ9H903 347 aaPredicted RBP6.29□□□□□ -1.4
VPS50-218ENST00000485994 TIGARQ9NQ88 270 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 SDR39U1Q9NRG7 319 aaPredicted RBP6.29□□□□□ -1.4
VPS50-218ENST00000485994 CRIM1Q9NZV1 1036 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 ZIM2Q9NZV7 527 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 PACSIN3Q9UKS6 424 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 LIPT1Q9Y234 373 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 GMEB1Q9Y692 573 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 CADP27708 2225 aa6.29□□□□□ -1.4
VPS50-218ENST00000485994 A0A0J9YW62 118 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 RNF103-CHMP3A0A140T963 221 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 TUBAL3A6NHL2 446 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 GJE1A6NN92 205 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 A6NNC1 897 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 H0YC42 278 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 H3BML4 177 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 UBDO15205 165 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 FCMRO60667 390 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 SLC22A3O75751 556 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 CPSF4O95639 269 aaKnown RBP6.28□□□□□ -1.4
VPS50-218ENST00000485994 OR12D1P0DN82 309 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 PRKCAP17252 672 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 ME2P23368 584 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 UQCRC1P31930 480 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 CD79BP40259 229 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 CLK1P49759 484 aaKnown RBP6.28□□□□□ -1.4
VPS50-218ENST00000485994 ANXA11P50995 505 aaKnown RBP6.28□□□□□ -1.4
VPS50-218ENST00000485994 MAP2K6P52564 334 aa6.28□□□□□ -1.4
VPS50-218ENST00000485994 AGFG1P52594 562 aaKnown RBP6.28□□□□□ -1.4
VPS50-218ENST00000485994 TPD52P55327 224 aaPredicted RBP6.28□□□□□ -1.4
VPS50-218ENST00000485994 CARD18P57730 90 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms