RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	KRT84	Q9NSB2	600 aa		10.27	□□□□□ -0.77
APTX-223	ENST00000479656	YARS2	Q9Y2Z4	477 aa	Known RBP	10.27	□□□□□ -0.77
APTX-223	ENST00000479656	PTPRZ1	P23471	2315 aa	Predicted RBP	10.27	□□□□□ -0.77
APTX-223	ENST00000479656	OR6B1	O95007	311 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	LYPD3	O95274	346 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	SERPINA7	P05543	415 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	LINGO3	P0C6S8	592 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	CBL	P22681	906 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	TMED10	P49755	219 aa	Known RBP	10.26	□□□□□ -0.77
APTX-223	ENST00000479656	CCR4	P51679	360 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	RAD23A	P54725	363 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	MLF1	P58340	268 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	ZNF117	Q03924	483 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	CHAF1B	Q13112	559 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	SRSF6	Q13247	344 aa	Known RBP	10.26	□□□□□ -0.77
APTX-223	ENST00000479656	SKP2	Q13309	424 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	MED21	Q13503	144 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	ZNF791	Q3KP31	576 aa	Predicted RBP	10.26	□□□□□ -0.77
APTX-223	ENST00000479656	SLC36A3	Q495N2	470 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	B3GNTL1	Q67FW5	361 aa	Predicted RBP	10.26	□□□□□ -0.77
APTX-223	ENST00000479656	PRICKLE2	Q7Z3G6	844 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	APLF	Q8IW19	511 aa	Predicted RBP	10.26	□□□□□ -0.77
APTX-223	ENST00000479656	ZNF440	Q8IYI8	595 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	TMCO5A	Q8N6Q1	288 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	SIRT6	Q8N6T7	355 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	LSMEM1	Q8N8F7	131 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	OR10G3	Q8NGC4	313 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	OR4K5	Q8NGD3	323 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	DUSP19	Q8WTR2	217 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	TMEM255B	Q8WV15	326 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	TTC9	Q92623	222 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	SPACA9	Q96E40	222 aa	Predicted RBP	10.26	□□□□□ -0.77
APTX-223	ENST00000479656	CNBD2	Q96M20	576 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	MBOAT4	Q96T53	435 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	KLHDC3	Q9BQ90	382 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	PSD2	Q9BQI7	771 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	PRSS27	Q9BQR3	290 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	TRIM2	Q9C040	744 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	POLR2J2	Q9GZM3	115 aa	Known RBP	10.26	□□□□□ -0.77
APTX-223	ENST00000479656	LAT2	Q9GZY6	243 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	POLR2J3	Q9H1A7	115 aa	Known RBP	10.26	□□□□□ -0.77
APTX-223	ENST00000479656	KLK13	Q9UKR3	277 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	LRCH1	Q9Y2L9	728 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656	ORC6	Q9Y5N6	252 aa		10.26	□□□□□ -0.77
APTX-223	ENST00000479656		A0A1B0GWA3	101 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ADAM10	O14672	748 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	HCRTR2	O43614	444 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	CLIC3	O95833	236 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	RPSA	P08865	295 aa	Known RBP	10.25	□□□□□ -0.77
APTX-223	ENST00000479656	SPINK2	P20155	84 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	PTN	P21246	168 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ITPKB	P27987	946 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	IDH2	P48735	452 aa	Known RBP	10.25	□□□□□ -0.77
APTX-223	ENST00000479656	CLK3	P49761	638 aa	Known RBP	10.25	□□□□□ -0.77
APTX-223	ENST00000479656	SSR4	P51571	173 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ADARB1	P78563	741 aa	Known RBP	10.25	□□□□□ -0.77
APTX-223	ENST00000479656	FOXC1	Q12948	553 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	KCNAB2	Q13303	367 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	NTRK2	Q16620	822 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ATP1A1-AS1	Q5TC04	95 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	BICRAL	Q6AI39	1079 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	OR5M10	Q6IEU7	315 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	H3F3C	Q6NXT2	135 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ZNF613	Q6PF04	617 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ZNF730	Q6ZMV8	503 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	WDR88	Q6ZMY6	472 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	RRM2B	Q7LG56	351 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ZER1	Q7Z7L7	766 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	BRIX1	Q8TDN6	353 aa	Known RBP	10.25	□□□□□ -0.77
APTX-223	ENST00000479656	PSMF1	Q92530	271 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ZNF524	Q96C55	264 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	THOC3	Q96J01	351 aa	Known RBP	10.25	□□□□□ -0.77
APTX-223	ENST00000479656	RDH12	Q96NR8	316 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	RIBC2	Q9H4K1	309 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656		Q9H521	79 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ANKRD19P	Q9H560	264 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ZNF556	Q9HAH1	456 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	GALNT9	Q9HCQ5	603 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	EXOSC3	Q9NQT5	275 aa	Known RBP	10.25	□□□□□ -0.77
APTX-223	ENST00000479656	FAM118A	Q9NWS6	357 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	CNOT1	A5YKK6	2376 aa	Known RBP	10.25	□□□□□ -0.77
APTX-223	ENST00000479656		A0A0B4J2E0	115 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656		A0A1B0GX12	115 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ARRDC5	A6NEK1	342 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	GNAO1	P09471	354 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	SDHB	P21912	280 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	CAPG	P40121	348 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	COPZ1	P61923	177 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	RFX4	Q33E94	735 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	CMPK2	Q5EBM0	449 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	DCAF10	Q5QP82	559 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	PGBD2	Q6P3X8	592 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	OPN5	Q6U736	354 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	MEX3D	Q86XN8	651 aa	Known RBP	10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ARMC10	Q8N2F6	343 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	TMEM156	Q8N614	296 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ACOT11	Q8WXI4	607 aa	Predicted RBP	10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ASB15	Q8WXK1	588 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	IP6K3	Q96PC2	410 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	PAPOLB	Q9NRJ5	636 aa	Known RBP	10.25	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms