RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ZNF385DQ9H6B1 395 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 TMEM185BQ9H7F4 350 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 CXorf36Q9H7Y0 433 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 ZNF275Q9NSD4 429 aaPredicted RBP6.92□□□□□ -1.3
USP54-211ENST00000474929 C1RLQ9NZP8 487 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 SLC17A6Q9P2U8 582 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 TET2Q6N021 2002 aaPredicted RBP6.92□□□□□ -1.3
USP54-211ENST00000474929 TENM2Q9NT68 2774 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 C1orf226A1L170 272 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 SRRM5B3KS81 715 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 SHISA8B8ZZ34 492 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 SAP18O00422 153 aaKnown RBP6.91□□□□□ -1.3
USP54-211ENST00000474929 SYNGR3O43761 229 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 TMPRSS11DO60235 418 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 COQ9O75208 318 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 FOXH1O75593 365 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 HAUS5O94927 633 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 ANGPTL1O95841 491 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 MPIG6BO95866 241 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 TPM3P06753 285 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 SFTPBP07988 381 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 NHLRC4P0CG21 123 aaPredicted RBP6.91□□□□□ -1.3
USP54-211ENST00000474929 ENPP1P22413 925 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 PSMA4P25789 261 aaKnown RBP6.91□□□□□ -1.3
USP54-211ENST00000474929 PTX3P26022 381 aaPredicted RBP6.91□□□□□ -1.3
USP54-211ENST00000474929 SFTPDP35247 375 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 PRR5P85299 388 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 TEKQ02763 1124 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 CSTF3Q12996 717 aaKnown RBP6.91□□□□□ -1.3
USP54-211ENST00000474929 CUL3Q13618 768 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 PDK3Q15120 406 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 CDKL4Q5MAI5 379 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 FAM45BPQ6NSW5 357 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 VHLLQ6RSH7 139 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 CNTN4Q8IWV2 1026 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 SAMD14Q8IZD0 417 aaPredicted RBP6.91□□□□□ -1.3
USP54-211ENST00000474929 OR4S1Q8NGB4 309 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 FAM45AQ8TCE6 357 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 TRIM44Q96DX7 344 aaPredicted RBP6.91□□□□□ -1.3
USP54-211ENST00000474929 TIMD4Q96H15 378 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 ZNF48Q96MX3 618 aaPredicted RBP6.91□□□□□ -1.3
USP54-211ENST00000474929 NAP1L3Q99457 506 aaPredicted RBP6.91□□□□□ -1.3
USP54-211ENST00000474929 OR51B5Q9H339 312 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 TPK1Q9H3S4 243 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 C20orf96Q9NUD7 363 aaPredicted RBP6.91□□□□□ -1.3
USP54-211ENST00000474929 TAS2R9Q9NYW1 312 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 NOSIPQ9Y314 301 aaKnown RBP6.91□□□□□ -1.3
USP54-211ENST00000474929 TSC22D4Q9Y3Q8 395 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 PCDHGB5Q9Y5G0 923 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 AUP1Q9Y679 476 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 POMT1Q9Y6A1 747 aa6.91□□□□□ -1.3
USP54-211ENST00000474929 A0A1W2PRB8 838 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 C17orf51A8MQB3 221 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 E9PQ18 207 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 LYNX1G3V0Z9 82 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 CBFA2T2O43439 604 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 DEAF1O75398 565 aaPredicted RBP6.9□□□□□ -1.3
USP54-211ENST00000474929 STK16O75716 305 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 SEMA3DO95025 777 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 CLDN9O95484 217 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 TTC4O95801 387 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 IGHV2-5P01817 119 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 GYPCP04921 128 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 F13BP05160 661 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 ADRA2AP08913 450 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 CCDC175P0C221 793 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 LYNX1P0DP58 116 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 FUT4P22083 530 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 TYK2P29597 1187 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 GDF5P43026 501 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 CORO7P57737 925 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 SELENBP1Q13228 472 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 CHIT1Q13231 466 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 NRN1LQ496H8 165 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 OTUD3Q5T2D3 398 aaPredicted RBP6.9□□□□□ -1.3
USP54-211ENST00000474929 SLC48A1Q6P1K1 146 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 FIP1L1Q6UN15 594 aaKnown RBP6.9□□□□□ -1.3
USP54-211ENST00000474929 PAGE2Q7Z2X7 111 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 ABHD12BQ7Z5M8 362 aaPredicted RBP6.9□□□□□ -1.3
USP54-211ENST00000474929 GALNT7Q86SF2 657 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 SLC44A2Q8IWA5 706 aaPredicted RBP6.9□□□□□ -1.3
USP54-211ENST00000474929 WDFY1Q8IWB7 410 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 TXLNBQ8N3L3 684 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 WDR31Q8NA23 367 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 OR7G3Q8NG95 312 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 ST7LQ8TDW4 575 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 DYRK2Q92630 601 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 ZDHHC16Q969W1 377 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 PHF21AQ96BD5 680 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 BOD1Q96IK1 185 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 SORBS1Q9BX66 1292 aaKnown RBP6.9□□□□□ -1.3
USP54-211ENST00000474929 SERHL2Q9H4I8 314 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 C3orf14Q9HBI5 128 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 Q9N2J8 555 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 NOX4Q9NPH5 578 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 MED17Q9NVC6 651 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 SEC14L4Q9UDX3 406 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 PCDHGA11Q9Y5H2 935 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 ZNF780BQ9Y6R6 833 aa6.9□□□□□ -1.3
USP54-211ENST00000474929 SACSQ9NZJ4 4579 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms