RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 HMGN2P05204 90 aaKnown RBP10.89□□□□□ -0.67
CPSF3-202ENST00000460593 ZGLP1P0C6A0 271 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 PPP2R1BP30154 601 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 MMP15P51511 669 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 NCBP2P52298 156 aaKnown RBP eCLIP10.89□□□□□ -0.67
CPSF3-202ENST00000460593 FAM26DQ5JW98 314 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 TRAPPC5Q8IUR0 188 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 PIGXQ8TBF5 258 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 STK35Q8TDR2 534 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 PEX11GQ96HA9 241 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 NOX3Q9HBY0 568 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 TRIM36Q9NQ86 728 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 EXOSC3Q9NQT5 275 aaKnown RBP10.89□□□□□ -0.67
CPSF3-202ENST00000460593 ERVK-19Q9WJR5 959 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 CA5BQ9Y2D0 317 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 FCMRO60667 390 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 KHDRBS3O75525 346 aaKnown RBP10.89□□□□□ -0.67
CPSF3-202ENST00000460593 HOXB3P14651 431 aaPredicted RBP10.89□□□□□ -0.67
CPSF3-202ENST00000460593 UGT2B7P16662 529 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 PSMB1P20618 241 aaKnown RBP10.89□□□□□ -0.67
CPSF3-202ENST00000460593 IGSF11Q5DX21 431 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 DCAF12L2Q5VW00 463 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 MRGPREQ86SM8 312 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 TMEM150AQ86TG1 271 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 CCDC116Q8IYX3 515 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 HDDC3Q8N4P3 179 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 CLRN3Q8NCR9 226 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 DPYSL5Q9BPU6 564 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 UBQLN3Q9H347 655 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 LHX9Q9NQ69 397 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 TAC3Q9UHF0 121 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 ICKQ9UPZ9 632 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 RNF215Q9Y6U7 377 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 SCN10AQ9Y5Y9 1956 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 K7ESM1 405 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 PSMD9O00233 223 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 RP2O75695 350 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 GLAP06280 429 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 HLA-FP30511 346 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 PCBP4P57723 403 aaKnown RBP10.88□□□□□ -0.67
CPSF3-202ENST00000460593 ZNF697Q5TEC3 545 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 OR7E24Q6IFN5 339 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 SEZ6L2Q6UXD5 910 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 SLITRK4Q8IW52 837 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 ZNF433Q8N7K0 673 aaPredicted RBP10.88□□□□□ -0.67
CPSF3-202ENST00000460593 OR14A2Q96R54 314 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 SLC6A17Q9H1V8 727 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 ZNF334Q9HCZ1 680 aaPredicted RBP10.88□□□□□ -0.67
CPSF3-202ENST00000460593 SLC6A20Q9NP91 592 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 NPDC1Q9NQX5 325 aaPredicted RBP10.88□□□□□ -0.67
CPSF3-202ENST00000460593 PRELID3BQ9Y3B1 194 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 H7BY64 318 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 AIPO00170 330 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 KIAA0355O15063 1070 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 DUSP11O75319 330 aaKnown RBP10.88□□□□□ -0.67
CPSF3-202ENST00000460593 PTP4A3O75365 173 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 OR5F1O95221 314 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 EPXP11678 715 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 ZNF35P13682 527 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 ACHEP22303 614 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 S100A11P31949 105 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 BSGP35613 385 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 H2BFSP57053 126 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 ASTLQ6HA08 431 aaPredicted RBP10.88□□□□□ -0.67
CPSF3-202ENST00000460593 ZNF783Q6ZMS7 281 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 ZNF620Q6ZNG0 422 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 PFN4Q8NHR9 129 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 HAVCR2Q8TDQ0 301 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 PGLYRP3Q96LB9 341 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 PRAP1Q96NZ9 151 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 PDCD1LG2Q9BQ51 273 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 SPATA5L1Q9BVQ7 753 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 SLC13A4Q9UKG4 626 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 CACNA1CQ13936 2221 aa10.88□□□□□ -0.67
CPSF3-202ENST00000460593 SDC3O75056 442 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 CTSAP10619 480 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 IL9P15248 144 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 RAB3AP20336 220 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 ACSM1Q08AH1 577 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 SERTAD2Q14140 314 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 TRAM2Q15035 370 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 NIPAL3Q6P499 406 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 OR2T33Q8NG76 320 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 OR5AR1Q8NGP9 310 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 DIO2Q92813 273 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 OR2AG1Q9H205 316 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 ESRP2Q9H6T0 727 aaKnown RBP10.87□□□□□ -0.67
CPSF3-202ENST00000460593 PCYT1BQ9Y5K3 369 aaPredicted RBP10.87□□□□□ -0.67
CPSF3-202ENST00000460593 CENPVL1A0A0U1RR11 272 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 J3QRE1 110 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 SELENOFO60613 162 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 GABRA1P14867 456 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 MST1P26927 711 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 PSMB10P40306 273 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 SEC61A1P61619 476 aaKnown RBP10.87□□□□□ -0.67
CPSF3-202ENST00000460593 KHDRBS2Q5VWX1 349 aaKnown RBP10.87□□□□□ -0.67
CPSF3-202ENST00000460593 IKBIPQ70UQ0 350 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 SCARB1Q8WTV0 552 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 SMIM4Q8WVI0 70 aa10.87□□□□□ -0.67
CPSF3-202ENST00000460593 OSTF1Q92882 214 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms