RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 TMCO2Q7Z6W1 182 aaPredicted RBP12.53□□□□□ -0.4
USP40-208ENST00000450966 LRRTM4Q86VH4 590 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 C2CD4AQ8NCU7 369 aaPredicted RBP12.53□□□□□ -0.4
USP40-208ENST00000450966 ASB13Q8WXK3 278 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 KLHDC7BQ96G42 594 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 SCMH1Q96GD3 660 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 TGM7Q96PF1 710 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 OR7D2Q96RA2 312 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 SPIN2AQ99865 258 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 PTPN18Q99952 460 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 SPIN2BQ9BPZ2 258 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 ANKRD19PQ9H560 264 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 FN3KRPQ9HA64 309 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 UPK3BL1B0FP48 263 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 ZNF736B4DX44 427 aaPredicted RBP12.53□□□□□ -0.4
USP40-208ENST00000450966 UPK3BL2E5RIL1 263 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 ACOT8O14734 319 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 PEX10O60683 326 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 GABRA5P31644 462 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 CTSOP43234 321 aaPredicted RBP12.53□□□□□ -0.4
USP40-208ENST00000450966 EPHA5P54756 1037 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 HBMQ6B0K9 141 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 TMEM145Q8NBT3 493 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 TMEM163Q8TC26 289 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 EXTL1Q92935 676 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 OR2AG1Q9H205 316 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 KLF15Q9UIH9 416 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 SLC22A23A1A5C7 686 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 LEFTY2O00292 366 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 ADAMTS3O15072 1205 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 FZD7O75084 574 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 FBXO24O75426 580 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 MT-ND4LP03901 98 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 SOX2P48431 317 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 SOX9P48436 509 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 TAS2R19P59542 299 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 OR2T2Q6IF00 324 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 PRSS58Q8IYP2 241 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 OR2AJ1Q8NGZ0 328 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 SLAMF9Q96A28 289 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 SRRQ9GZT4 340 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 FBXL12Q9NXK8 326 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 LAMP5Q9UJQ1 280 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 NWD2Q9ULI1 1742 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 A0A1W2PPK0 400 aa12.52□□□□□ -0.4
USP40-208ENST00000450966 AP4M1O00189 453 aa12.52□□□□□ -0.4
USP40-208ENST00000450966 NME2P22392 152 aa12.52□□□□□ -0.4
USP40-208ENST00000450966 PLK5Q496M5 336 aa12.52□□□□□ -0.4
USP40-208ENST00000450966 UBE2NLQ5JXB2 153 aa12.52□□□□□ -0.4
USP40-208ENST00000450966 HSD17B13Q7Z5P4 300 aaPredicted RBP12.52□□□□□ -0.4
USP40-208ENST00000450966 EID2Q8N6I1 236 aa12.52□□□□□ -0.4
USP40-208ENST00000450966 ARFGAP1Q8N6T3 406 aa12.52□□□□□ -0.4
USP40-208ENST00000450966 FNDC9Q8TBE3 224 aa12.52□□□□□ -0.4
USP40-208ENST00000450966 CPNE4Q96A23 557 aaPredicted RBP12.52□□□□□ -0.4
USP40-208ENST00000450966 RBM38Q9H0Z9 239 aaKnown RBP12.52□□□□□ -0.4
USP40-208ENST00000450966 TSPAN10Q9H1Z9 355 aaPredicted RBP12.52□□□□□ -0.4
USP40-208ENST00000450966 PPP5D1E7EU14 171 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 LILRB3O75022 631 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 SUMO1P63165 101 aaKnown RBP12.52□□□□□ -0.41
USP40-208ENST00000450966 RING1Q06587 406 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 SEMA3BQ13214 749 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 MEGF10Q96KG7 1140 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 SERINC1Q9NRX5 453 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 RXFP3Q9NSD7 469 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 TERTO14746 1132 aaKnown RBP12.52□□□□□ -0.41
USP40-208ENST00000450966 SLC25A11Q02978 314 aaKnown RBP12.52□□□□□ -0.41
USP40-208ENST00000450966 DNM1P34Q6PK57 102 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 ABHD13Q7L211 337 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 ZNF808Q8N4W9 903 aaPredicted RBP12.52□□□□□ -0.41
USP40-208ENST00000450966 C15orf54Q8N8G6 183 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 ZNF610Q8N9Z0 462 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 RHEBL1Q8TAI7 183 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 C16orf70Q9BSU1 422 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 GAB2Q9UQC2 676 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 GPR89AB7ZAQ6 455 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 TMX2-CTNND1H3BSU7 103 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 ST8SIA5O15466 376 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 SCAF4O95104 1147 aaKnown RBP12.52□□□□□ -0.41
USP40-208ENST00000450966 HLA-AP01891 365 aaKnown RBP12.52□□□□□ -0.41
USP40-208ENST00000450966 GPR89BP0CG08 455 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 GNRHRP30968 328 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 GDNFP39905 211 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 RIN1Q13671 783 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 IQCF1Q8N6M8 205 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 HAVCR2Q8TDQ0 301 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 SYT3Q9BQG1 590 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 PDE7BQ9NP56 450 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 SLC2A9Q9NRM0 540 aa12.52□□□□□ -0.41
USP40-208ENST00000450966 MT-CYBP00156 380 aaPredicted RBP12.51□□□□□ -0.41
USP40-208ENST00000450966 CTSAP10619 480 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 CSF2RBP32927 897 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 PBX2P40425 430 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 AMZ1Q400G9 498 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 FIGNL1Q6PIW4 674 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 PGAP3Q96FM1 320 aaPredicted RBP12.51□□□□□ -0.41
USP40-208ENST00000450966 PRO1933Q9H354 126 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 RGPD8O14715 1765 aaPredicted RBP12.51□□□□□ -0.41
USP40-208ENST00000450966 SEC14L6B5MCN3 397 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 GABRA2P47869 451 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 PCK2Q16822 640 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms